ctcRbase

Entry Detail

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General Information

Database ID: BRCA02289 Cancer Type: breast cancer Dataset: GSE75367 CTCs/CTM Isolation Method: micromanipulation immunofluorescence

Gene Information

ncRNA Symbol: VAPA Full Name: VAMP associated protein A Category: mRNA Synonyms: VAP-33|VAP-A|VAP33|hVAP-33 Chromosome: chr18 Strand: + Coordinate: Start Site(bp): 9914002 End Site(bp): 9960021 Gene Summary: The protein encoded by this gene is a type IV membrane protein. It is present in the plasma membrane and intracellular vesicles. It may also be associated with the cytoskeleton. This protein may function in vesicle trafficking, membrane fusion, protein complex assembly and cell motility. Alternative splicing occurs at this locus and two transcript variants encoding distinct isoforms have been identified. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000101558 HGNC ID: HGNC:12648 Entrez Gene: 9218

Expression Profile of VAPA Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-132-3p YES NO YES hsa-miR-145-5p YES NO YES hsa-miR-186-5p YES NO NO hsa-miR-194-5p YES YES YES hsa-miR-19a-3p YES NO YES hsa-miR-19b-3p YES NO YES hsa-miR-212-3p YES NO YES hsa-miR-216b-5p YES YES NO hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-300 YES YES NO hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-323a-3p YES NO YES hsa-miR-329-3p YES NO YES hsa-miR-330-3p YES NO YES hsa-miR-335-5p YES NO YES hsa-miR-362-3p YES NO YES hsa-miR-371a-5p YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-421 YES YES NO hsa-miR-451a YES NO YES hsa-miR-489-3p YES NO YES hsa-miR-499a-5p YES YES NO hsa-miR-505-3p YES YES YES hsa-miR-543 YES NO YES hsa-miR-655-3p YES NO YES hsa-miR-875-5p YES NO YES Display: