Entry Detail



General Information

Database ID:BRCA02307
Cancer Type:breast cancer
Dataset:GSE41245
CTCs/CTM Isolation Method:CTC-Chip



Gene Information

ncRNA Symbol:MSR1
Full Name:macrophage scavenger receptor 1
Category:mRNA
Synonyms:CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2
Chromosome:chr8
Strand:-
Coordinate:
Start Site(bp):16107878End Site(bp):16567490
Gene Summary:This gene encodes the class A macrophage scavenger receptors, which include three different types (1, 2, 3) generated by alternative splicing of this gene. These receptors or isoforms are macrophage-specific trimeric integral membrane glycoproteins and have been implicated in many macrophage-associated physiological and pathological processes including atherosclerosis, Alzheimer's disease, and host defense. The isoforms type 1 and type 2 are functional receptors and are able to mediate the endocytosis of modified low density lipoproteins (LDLs). The isoform type 3 does not internalize modified LDL (acetyl-LDL) despite having the domain shown to mediate this function in the types 1 and 2 isoforms. It has an altered intracellular processing and is trapped within the endoplasmic reticulum, making it unable to perform endocytosis. The isoform type 3 can inhibit the function of isoforms type 1 and type 2 when co-expressed, indicating a dominant negative effect and suggesting a mechanism for regulation of scavenger receptor activity in macrophages. [provided by RefSeq, Jul 2008]
External Links:
Ensembl ID:ENSG00000038945
HGNC ID:HGNC:7376
Entrez Gene:4481



Expression Profile of MSR1 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-let-7a-5p
YES
YES
YES
hsa-let-7b-5p
YES
YES
YES
hsa-let-7c-5p
YES
YES
YES
hsa-let-7d-5p
YES
YES
YES
hsa-let-7e-5p
YES
YES
YES
hsa-let-7f-5p
YES
YES
YES
hsa-let-7g-5p
YES
YES
YES
hsa-let-7i-5p
YES
YES
YES
hsa-miR-10a-5p
YES
YES
YES
hsa-miR-10b-5p
YES
YES
YES
hsa-miR-185-5p
YES
YES
NO
hsa-miR-377-3p
YES
YES
YES
hsa-miR-98-5p
YES
YES
YES
Display: