ctcRbase

Entry Detail

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General Information

Database ID: BRCA02643 Cancer Type: breast cancer Dataset: GSE109761 CTCs/CTM Isolation Method: microfluidics immunofluorescence

Gene Information

ncRNA Symbol: PEF1 Full Name: penta-EF-hand domain containing 1 Category: mRNA Synonyms: ABP32|PEF1A Chromosome: chr1 Strand: - Coordinate: Start Site(bp): 31629862 End Site(bp): 31644896 Gene Summary: This gene encodes a calcium-binding protein belonging to the penta-EF-hand protein family. The encoded protein has been shown to form a heterodimer with the programmed cell death 6 gene product and may modulate its function in Ca(2+) signaling. Alternative splicing results in multiple transcript variants and a pseudogene has been identified on chromosome 1.[provided by RefSeq, May 2010] External Links: Ensembl ID: ENSG00000162517 HGNC ID: HGNC:30009 Entrez Gene: 553115

Expression Profile of PEF1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-136-5p YES YES NO hsa-miR-181a-5p YES YES NO hsa-miR-181b-5p YES YES NO hsa-miR-181c-5p YES YES NO hsa-miR-181d-5p YES YES NO hsa-miR-197-3p YES YES NO hsa-miR-328-3p YES YES YES hsa-miR-378a-3p YES YES YES hsa-miR-422a YES YES YES Display: