ctcRbase

Entry Detail

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General Information

Database ID: BRCA03591 Cancer Type: breast cancer Dataset: GSE75367 CTCs/CTM Isolation Method: micromanipulation immunofluorescence

Gene Information

ncRNA Symbol: SRSF9 Full Name: serine and arginine rich splicing factor 9 Category: mRNA Synonyms: SFRS9|SRp30c Chromosome: chr12 Strand: - Coordinate: Start Site(bp): 120461668 End Site(bp): 120469793 Gene Summary: The protein encoded by this gene is a member of the serine/arginine (SR)-rich family of pre-mRNA splicing factors, which constitute part of the spliceosome. Each of these factors contains an RNA recognition motif (RRM) for binding RNA and an RS domain for binding other proteins. The RS domain is rich in serine and arginine residues and facilitates interaction between different SR splicing factors. In addition to being critical for mRNA splicing, the SR proteins have also been shown to be involved in mRNA export from the nucleus and in translation. Two pseudogenes, one on chromosome 15 and the other on chromosome 21, have been found for this gene. [provided by RefSeq, Sep 2010] External Links: Ensembl ID: ENSG00000111786 HGNC ID: HGNC:10791 Entrez Gene: 8683

Expression Profile of SRSF9 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES NO hsa-miR-128-3p YES YES YES hsa-miR-136-5p YES NO YES hsa-miR-1-3p YES YES YES hsa-miR-206 YES YES YES hsa-miR-208a-3p YES YES NO hsa-miR-208b-3p YES YES NO hsa-miR-27a-3p YES YES YES hsa-miR-27b-3p YES YES YES hsa-miR-300 YES YES YES hsa-miR-328-3p YES YES YES hsa-miR-330-3p YES NO YES hsa-miR-379-5p YES YES YES hsa-miR-381-3p YES YES YES hsa-miR-384 YES YES YES hsa-miR-499a-5p YES YES NO hsa-miR-543 YES YES NO hsa-miR-613 YES YES YES hsa-miR-802 YES NO YES Display: