ctcRbase

Entry Detail

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General Information

Database ID: BRCA03906 Cancer Type: breast cancer Dataset: GSE41245 CTCs/CTM Isolation Method: CTC-Chip

Gene Information

ncRNA Symbol: SNX27 Full Name: sorting nexin family member 27 Category: mRNA Synonyms: MRT1|MY014 Chromosome: chr1 Strand: + Coordinate: Start Site(bp): 151612065 End Site(bp): 151699091 Gene Summary: This gene encodes a member of the sorting nexin family, a diverse group of cytoplasmic and membrane-associated proteins involved in endocytosis of plasma membrane receptors and protein trafficking through these compartments. All members of this protein family contain a phosphoinositide binding domain (PX domain). A highly similar protein in mouse is responsible for the specific recruitment of an isoform of serotonin 5-hydroxytryptamine 4 receptor into early endosomes, suggesting the analogous role for the human protein. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000143376 HGNC ID: HGNC:20073 Entrez Gene: 81609

Expression Profile of SNX27 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1252-5p YES NO NO hsa-miR-130a-3p YES YES YES hsa-miR-130b-3p YES YES YES hsa-miR-138-5p YES YES NO hsa-miR-140-5p YES YES YES hsa-miR-141-3p YES NO YES hsa-miR-143-3p YES YES NO hsa-miR-145-5p YES YES YES hsa-miR-148a-3p YES YES YES hsa-miR-148b-3p YES YES YES hsa-miR-149-5p YES YES NO hsa-miR-152-3p YES YES YES hsa-miR-182-5p YES YES NO hsa-miR-185-5p YES NO NO hsa-miR-186-5p YES YES YES hsa-miR-19a-3p YES YES YES hsa-miR-19b-3p YES YES YES hsa-miR-200a-3p YES NO YES hsa-miR-205-5p YES NO YES hsa-miR-217 YES YES YES hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-24-3p YES NO YES hsa-miR-300 YES YES YES hsa-miR-301a-3p YES YES YES hsa-miR-301b-3p YES YES YES hsa-miR-30a-5p YES NO YES hsa-miR-30b-5p YES NO YES hsa-miR-30c-5p YES NO YES hsa-miR-30d-5p YES NO YES hsa-miR-30e-5p YES NO YES hsa-miR-323a-3p YES NO YES hsa-miR-339-5p YES NO YES hsa-miR-376a-3p YES NO YES hsa-miR-376b-3p YES NO YES hsa-miR-381-3p YES YES YES hsa-miR-409-5p YES NO YES hsa-miR-410-3p YES NO YES hsa-miR-433-3p YES NO YES hsa-miR-454-3p YES YES YES hsa-miR-485-5p YES YES NO hsa-miR-488-3p YES YES YES hsa-miR-599 YES YES NO Display: