ctcRbase

Entry Detail

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General Information

Database ID: BRCA04078 Cancer Type: breast cancer Dataset: GSE41245 CTCs/CTM Isolation Method: CTC-Chip

Gene Information

ncRNA Symbol: VMP1 Full Name: vacuole membrane protein 1 Category: mRNA Synonyms: EPG3|TANGO5|TMEM49 Chromosome: chr17 Strand: + Coordinate: Start Site(bp): 59707192 End Site(bp): 59842255 Gene Summary: This gene encodes a transmembrane protein that plays a key regulatory role in the process of autophagy. The ectopic overexpression of the encoded protein in cultured cells triggers autophagy even under nutrient-rich conditions. This gene is overexpressed in pancreatitis affected acinar cells where the encoded protein mediates sequestration and degradation of potentially deleterious activated zymogen granules in a process termed, zymophagy. [provided by RefSeq, Jul 2016] External Links: Ensembl ID: ENSG00000062716 HGNC ID: HGNC:29559 Entrez Gene: 81671

Expression Profile of VMP1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-124-3p YES NO YES hsa-miR-1298-5p YES NO YES hsa-miR-130a-3p YES YES YES hsa-miR-130b-3p YES YES YES hsa-miR-1-3p YES YES YES hsa-miR-142-5p YES NO YES hsa-miR-148a-3p YES YES YES hsa-miR-148b-3p YES YES YES hsa-miR-150-5p YES YES YES hsa-miR-152-3p YES YES YES hsa-miR-194-5p YES YES NO hsa-miR-19a-3p YES NO YES hsa-miR-19b-3p YES NO YES hsa-miR-206 YES YES YES hsa-miR-210-3p YES YES NO hsa-miR-223-3p YES YES YES hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-296-3p YES YES NO hsa-miR-299-3p YES YES NO hsa-miR-301a-3p YES YES YES hsa-miR-301b-3p YES YES YES hsa-miR-328-3p YES YES NO hsa-miR-340-5p YES YES YES hsa-miR-371a-5p YES YES YES hsa-miR-382-5p YES YES NO hsa-miR-454-3p YES YES YES hsa-miR-488-3p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-542-3p YES YES NO hsa-miR-613 YES YES YES hsa-miR-758-3p YES YES YES hsa-miR-873-5p YES YES NO Display: