ctcRbase

Entry Detail

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General Information

Database ID: BRCA05060 Cancer Type: breast cancer Dataset: GSE109761 CTCs/CTM Isolation Method: microfluidics immunofluorescence

Gene Information

ncRNA Symbol: MATR3 Full Name: matrin 3 Category: mRNA Synonyms: ALS21|MPD2|VCPDM Chromosome: chr5 Strand: + Coordinate: Start Site(bp): 139273752 End Site(bp): 139331671 Gene Summary: This gene encodes a nuclear matrix protein, which is proposed to stabilize certain messenger RNA species. Mutations of this gene are associated with distal myopathy 2, which often includes vocal cord and pharyngeal weakness. Alternatively spliced transcript variants, including read-through transcripts composed of the upstream small nucleolar RNA host gene 4 (non-protein coding) and matrin 3 gene sequence, have been identified. Pseudogenes of this gene are located on chromosomes 1 and X. [provided by RefSeq, Aug 2013] External Links: Ensembl ID: ENSG00000280987 HGNC ID: NA Entrez Gene: 9782

Expression Profile of MATR3 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-129-5p YES YES NO hsa-miR-1297 YES YES YES hsa-miR-1-3p YES YES YES hsa-miR-140-5p YES YES YES hsa-miR-141-3p YES YES NO hsa-miR-143-3p YES YES NO hsa-miR-154-5p YES YES NO hsa-miR-181a-5p YES YES NO hsa-miR-181b-5p YES YES NO hsa-miR-181c-5p YES YES NO hsa-miR-181d-5p YES YES NO hsa-miR-186-5p YES YES NO hsa-miR-19a-3p YES YES NO hsa-miR-19b-3p YES YES NO hsa-miR-200a-3p YES YES NO hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-206 YES YES YES hsa-miR-216a-5p YES YES NO hsa-miR-216b-5p YES YES NO hsa-miR-24-3p YES YES YES hsa-miR-26a-5p YES YES YES hsa-miR-26b-5p YES YES YES hsa-miR-28-3p YES NO YES hsa-miR-296-3p YES YES NO hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-329-3p YES YES YES hsa-miR-361-5p YES YES NO hsa-miR-362-3p YES YES YES hsa-miR-371a-5p YES YES NO hsa-miR-375 YES YES YES hsa-miR-382-5p YES YES NO hsa-miR-409-3p YES NO YES hsa-miR-410-3p YES YES YES hsa-miR-425-5p YES YES YES hsa-miR-429 YES YES YES hsa-miR-452-5p YES NO YES hsa-miR-488-3p YES YES NO hsa-miR-489-3p YES NO YES hsa-miR-495-3p YES YES NO hsa-miR-543 YES YES YES hsa-miR-613 YES YES YES hsa-miR-653-5p YES YES NO hsa-miR-655-3p YES NO YES hsa-miR-873-5p YES YES YES Display: