ctcRbase

Entry Detail

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General Information

Database ID: BRCA05238 Cancer Type: breast cancer Dataset: GSE109761 CTCs/CTM Isolation Method: microfluidics immunofluorescence

Gene Information

ncRNA Symbol: TSPAN3 Full Name: tetraspanin 3 Category: mRNA Synonyms: TM4-A|TM4SF8|TSPAN-3 Chromosome: chr15 Strand: - Coordinate: Start Site(bp): 77041404 End Site(bp): 77083984 Gene Summary: The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. The use of alternate polyadenylation sites has been found for this gene. Multiple alternative transcripts encoding different isoforms have been described. [provided by RefSeq, Dec 2009] External Links: Ensembl ID: ENSG00000140391 HGNC ID: HGNC:17752 Entrez Gene: 10099

Expression Profile of TSPAN3 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES YES hsa-miR-1197 YES NO YES hsa-miR-130a-3p YES YES YES hsa-miR-130b-3p YES YES YES hsa-miR-132-3p YES YES NO hsa-miR-139-5p YES YES YES hsa-miR-140-3p YES NO YES hsa-miR-142-3p YES YES NO hsa-miR-142-5p YES NO YES hsa-miR-144-3p YES YES YES hsa-miR-153-3p YES YES NO hsa-miR-194-5p YES YES NO hsa-miR-196a-5p YES YES NO hsa-miR-196b-5p YES YES NO hsa-miR-199a-3p YES NO YES hsa-miR-199a-5p YES YES YES hsa-miR-199b-3p YES NO YES hsa-miR-199b-5p YES YES YES hsa-miR-212-3p YES YES NO hsa-miR-218-5p YES YES YES hsa-miR-22-3p YES YES NO hsa-miR-23a-3p YES YES NO hsa-miR-23b-3p YES YES NO hsa-miR-301a-3p YES YES YES hsa-miR-301b-3p YES YES YES hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-323a-3p YES NO YES hsa-miR-340-5p YES YES YES hsa-miR-342-3p YES YES NO hsa-miR-423-5p YES NO YES hsa-miR-448 YES YES NO hsa-miR-454-3p YES YES YES hsa-miR-487b-3p YES YES NO hsa-miR-488-3p YES YES YES hsa-miR-499a-5p YES YES YES Display: