ctcRbase

Entry Detail

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General Information

Database ID: BRCA05587 Cancer Type: breast cancer Dataset: GSE111065 CTCs/CTM Isolation Method: microfluidics immunofluorescence

Gene Information

ncRNA Symbol: SRSF1 Full Name: serine and arginine rich splicing factor 1 Category: mRNA Synonyms: ASF|SF2|SF2p33|SFRS1|SRp30a Chromosome: chr17 Strand: - Coordinate: Start Site(bp): 58003360 End Site(bp): 58007346 Gene Summary: This gene encodes a member of the arginine/serine-rich splicing factor protein family. The encoded protein can either activate or repress splicing, depending on its phosphorylation state and its interaction partners. Multiple transcript variants have been found for this gene. There is a pseudogene of this gene on chromosome 13. [provided by RefSeq, Jun 2014] External Links: Ensembl ID: ENSG00000136450 HGNC ID: HGNC:10780 Entrez Gene: 6426

Expression Profile of SRSF1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-10a-5p YES YES YES hsa-miR-10b-5p YES YES YES hsa-miR-128-3p YES NO YES hsa-miR-132-3p YES NO YES hsa-miR-136-5p YES YES YES hsa-miR-139-5p YES NO YES hsa-miR-1-3p YES YES YES hsa-miR-153-3p YES YES YES hsa-miR-155-5p YES YES NO hsa-miR-190a-5p YES YES YES hsa-miR-190b YES YES YES hsa-miR-199a-5p YES NO YES hsa-miR-199b-5p YES NO YES hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-206 YES YES YES hsa-miR-212-3p YES NO YES hsa-miR-214-3p YES YES NO hsa-miR-27a-3p YES YES YES hsa-miR-27b-3p YES YES YES hsa-miR-28-3p YES NO YES hsa-miR-28-5p YES NO YES hsa-miR-296-5p YES NO YES hsa-miR-300 YES NO YES hsa-miR-330-3p YES NO YES hsa-miR-365a-3p YES NO YES hsa-miR-370-3p YES YES YES hsa-miR-376a-3p YES YES YES hsa-miR-376b-3p YES YES YES hsa-miR-377-3p YES YES YES hsa-miR-381-3p YES NO YES hsa-miR-382-5p YES YES YES hsa-miR-421 YES NO YES hsa-miR-425-5p YES NO YES hsa-miR-429 YES YES YES hsa-miR-483-3p YES NO YES hsa-miR-486-5p YES NO YES hsa-miR-488-3p YES NO YES hsa-miR-489-3p YES NO YES hsa-miR-495-3p YES YES YES hsa-miR-542-3p YES NO YES hsa-miR-582-5p YES NO YES hsa-miR-613 YES YES YES hsa-miR-708-5p YES NO YES hsa-miR-7-5p YES NO YES hsa-miR-9-5p YES YES YES Display: