ctcRbase

Entry Detail

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General Information

Database ID: BRCA06316 Cancer Type: breast cancer Dataset: GSE109761 CTCs/CTM Isolation Method: microfluidics immunofluorescence

Gene Information

ncRNA Symbol: CPSF6 Full Name: cleavage and polyadenylation specific factor 6 Category: mRNA Synonyms: CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 Chromosome: chr12 Strand: + Coordinate: Start Site(bp): 69239537 End Site(bp): 69274358 Gene Summary: The protein encoded by this gene is one subunit of a cleavage factor required for 3' RNA cleavage and polyadenylation processing. The interaction of the protein with the RNA is one of the earliest steps in the assembly of the 3' end processing complex and facilitates the recruitment of other processing factors. The cleavage factor complex is composed of four polypeptides. This gene encodes the 68kD subunit. It has a domain organization reminiscent of spliceosomal proteins. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000111605 HGNC ID: HGNC:13871 Entrez Gene: 11052

Expression Profile of CPSF6 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-125a-5p YES YES YES hsa-miR-125b-5p YES YES YES hsa-miR-1271-5p NO YES YES hsa-miR-135a-5p YES YES NO hsa-miR-135b-5p YES YES NO hsa-miR-137 YES YES YES hsa-miR-139-5p YES YES NO hsa-miR-140-5p YES YES NO hsa-miR-142-5p YES NO YES hsa-miR-145-5p NO YES YES hsa-miR-216b-5p YES YES NO hsa-miR-224-5p YES YES NO hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-34a-5p YES YES NO hsa-miR-34c-5p YES YES NO hsa-miR-377-3p YES YES YES hsa-miR-409-5p YES NO YES hsa-miR-410-3p YES YES YES hsa-miR-449a YES YES NO hsa-miR-449b-5p YES YES NO hsa-miR-495-3p YES YES YES hsa-miR-96-5p NO YES YES Display: