ctcRbase

Entry Detail

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General Information

Database ID: BRCA07176 Cancer Type: breast cancer Dataset: GSE55807 CTCs/CTM Isolation Method: CTC-iChip

Gene Information

ncRNA Symbol: SNRNP27 Full Name: small nuclear ribonucleoprotein U4/U6.U5 subunit 27 Category: mRNA Synonyms: 27K|RY1 Chromosome: chr2 Strand: + Coordinate: Start Site(bp): 69893560 End Site(bp): 69905575 Gene Summary: This gene encodes a serine/arginine-rich (SR) protein. SR proteins play important roles in pre-mRNA splicing by facilitating the recognition and selection of splice sites. The encoded protein associates with the 25S U4/U6.U5 tri-snRNP, a major component of the U2-type spiceosome. The expression of this gene may be altered in cells infected with the human T-cell lymphotropic virus type 1 (HTLV-1) retrovirus. A pseudogene of this gene is located on the long arm of chromosome 5. Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, Feb 2011] External Links: Ensembl ID: ENSG00000124380 HGNC ID: HGNC:30240 Entrez Gene: 11017

Expression Profile of SNRNP27 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES NO hsa-miR-128-3p YES YES NO hsa-miR-129-5p YES YES NO hsa-miR-146a-5p YES YES NO hsa-miR-146b-5p YES YES NO hsa-miR-153-3p YES YES NO hsa-miR-155-5p YES YES NO hsa-miR-185-5p YES YES NO hsa-miR-186-5p YES YES NO hsa-miR-217 YES YES NO hsa-miR-27a-3p YES YES NO hsa-miR-27b-3p YES YES NO hsa-miR-296-3p YES YES NO hsa-miR-300 YES YES NO hsa-miR-31-5p YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-384 YES YES YES hsa-miR-448 YES YES NO hsa-miR-653-5p YES YES NO Display: