ctcRbase

Entry Detail

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General Information

Database ID: BRCA07290 Cancer Type: breast cancer Dataset: GSE55807 CTCs/CTM Isolation Method: CTC-iChip

Gene Information

ncRNA Symbol: SCOC Full Name: short coiled-coil protein Category: mRNA Synonyms: HRIHFB2072|SCOCO|UNC-69 Chromosome: chr4 Strand: + Coordinate: Start Site(bp): 140257286 End Site(bp): 140385726 Gene Summary: This gene encodes a short coiled-coiled domain-containing protein that localizes to the Golgi apparatus. The encoded protein interacts with ADP-ribosylation factor-like proteins. Pseudogenes of this gene are found on chromosomes 1 and 14. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2009] External Links: Ensembl ID: ENSG00000153130 HGNC ID: HGNC:20335 Entrez Gene: 60592

Expression Profile of SCOC Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-103a-3p YES YES NO hsa-miR-107 YES YES NO hsa-miR-133a-3p YES NO YES hsa-miR-133b YES NO YES hsa-miR-142-5p YES NO YES hsa-miR-143-3p YES YES NO hsa-miR-144-3p YES YES NO hsa-miR-154-5p YES YES NO hsa-miR-15a-5p YES YES YES hsa-miR-15b-5p YES YES YES hsa-miR-16-5p YES YES YES hsa-miR-181a-5p YES YES YES hsa-miR-181b-5p YES YES YES hsa-miR-181c-5p YES YES YES hsa-miR-181d-5p YES YES YES hsa-miR-195-5p YES YES YES hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-205-5p YES YES NO hsa-miR-214-3p YES YES NO hsa-miR-221-3p YES YES NO hsa-miR-222-3p YES YES NO hsa-miR-320a YES YES YES hsa-miR-320b YES YES YES hsa-miR-320c YES YES YES hsa-miR-320d YES YES YES hsa-miR-330-3p YES NO YES hsa-miR-369-3p YES NO YES hsa-miR-374a-5p YES YES YES hsa-miR-374b-5p YES YES YES hsa-miR-376a-3p YES YES YES hsa-miR-376b-3p YES YES YES hsa-miR-377-3p YES YES NO hsa-miR-383-5p YES YES NO hsa-miR-421 YES YES YES hsa-miR-424-5p YES YES YES hsa-miR-429 YES YES YES hsa-miR-452-5p YES NO YES hsa-miR-497-5p YES YES YES hsa-miR-542-3p YES YES NO hsa-miR-543 YES YES YES hsa-miR-655-3p YES NO YES Display: