ctcRbase

Entry Detail

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General Information

Database ID: BRCA07380 Cancer Type: breast cancer Dataset: GSE111065 CTCs/CTM Isolation Method: microfluidics immunofluorescence

Gene Information

ncRNA Symbol: TCERG1 Full Name: transcription elongation regulator 1 Category: mRNA Synonyms: CA150|TAF2S|Urn1 Chromosome: chr5 Strand: + Coordinate: Start Site(bp): 146447311 End Site(bp): 146511961 Gene Summary: This gene encodes a nuclear protein that regulates transcriptional elongation and pre-mRNA splicing. The encoded protein interacts with the hyperphosphorylated C-terminal domain of RNA polymerase II via multiple FF domains, and with the pre-mRNA splicing factor SF1 via a WW domain. Alternative splicing results in multiple transcripts variants encoding different isoforms. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000113649 HGNC ID: HGNC:15630 Entrez Gene: 10915

Expression Profile of TCERG1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-140-5p YES YES NO hsa-miR-141-3p YES YES YES hsa-miR-155-5p YES YES NO hsa-miR-17-5p YES YES NO hsa-miR-181a-5p YES YES YES hsa-miR-181b-5p YES YES YES hsa-miR-181c-5p YES YES YES hsa-miR-181d-5p YES YES YES hsa-miR-199a-5p YES YES NO hsa-miR-199b-5p YES YES NO hsa-miR-200a-3p YES YES YES hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-223-3p YES YES YES hsa-miR-224-5p YES YES YES hsa-miR-24-3p YES YES YES hsa-miR-28-3p YES NO YES hsa-miR-296-3p YES YES YES hsa-miR-299-5p YES NO YES hsa-miR-326 YES YES NO hsa-miR-330-3p YES NO YES hsa-miR-330-5p YES YES NO hsa-miR-374a-5p YES YES YES hsa-miR-374b-5p YES YES YES hsa-miR-490-3p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-496 YES YES NO hsa-miR-519d-3p YES YES NO hsa-miR-543 YES YES YES hsa-miR-7-5p YES YES YES hsa-miR-93-5p YES YES NO Display: