ctcRbase

Entry Detail

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General Information

Database ID: BRCA16307 Cancer Type: breast cancer Dataset: GSE41245 CTCs/CTM Isolation Method: CTC-Chip

Gene Information

ncRNA Symbol: SOBP Full Name: sine oculis binding protein homolog Category: mRNA Synonyms: JXC1|MRAMS Chromosome: chr6 Strand: + Coordinate: Start Site(bp): 107489958 End Site(bp): 107660167 Gene Summary: The protein encoded by this gene is a nuclear zinc finger protein that is involved in development of the cochlea. Defects in this gene have also been linked to intellectual disability. [provided by RefSeq, Mar 2011] External Links: Ensembl ID: ENSG00000112320 HGNC ID: HGNC:29256 Entrez Gene: 55084

Expression Profile of SOBP Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES NO YES hsa-miR-106a-5p YES YES YES hsa-miR-106b-5p YES YES YES hsa-miR-10a-5p YES YES YES hsa-miR-10b-5p YES YES YES hsa-miR-129-5p YES YES NO hsa-miR-130b-3p YES YES NO hsa-miR-133a-3p YES NO YES hsa-miR-133b YES NO YES hsa-miR-138-5p YES YES YES hsa-miR-140-3p YES NO YES hsa-miR-141-3p YES YES YES hsa-miR-143-3p YES YES YES hsa-miR-144-3p YES YES YES hsa-miR-15a-5p YES YES YES hsa-miR-15b-5p YES YES YES hsa-miR-16-5p YES YES YES hsa-miR-17-5p YES YES YES hsa-miR-183-5p YES YES YES hsa-miR-194-5p YES YES YES hsa-miR-195-5p YES YES YES hsa-miR-200a-3p YES YES YES hsa-miR-20a-5p YES YES YES hsa-miR-20b-5p YES YES YES hsa-miR-214-3p YES YES NO hsa-miR-219a-5p YES YES YES hsa-miR-25-3p YES YES YES hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-320a YES YES YES hsa-miR-320b YES YES YES hsa-miR-320c YES YES YES hsa-miR-320d YES YES YES hsa-miR-324-5p YES YES NO hsa-miR-32-5p YES YES YES hsa-miR-326 YES YES YES hsa-miR-330-5p YES YES YES hsa-miR-363-3p YES YES YES hsa-miR-367-3p YES YES YES hsa-miR-378a-3p YES YES YES hsa-miR-422a YES YES YES hsa-miR-424-5p YES YES YES hsa-miR-448 YES YES NO hsa-miR-488-3p YES YES NO hsa-miR-497-5p YES YES YES hsa-miR-519d-3p YES YES YES hsa-miR-92a-3p YES YES YES hsa-miR-92b-3p YES YES YES hsa-miR-93-5p YES YES YES Display: