ctcRbase

Entry Detail

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General Information

Database ID: BRCA20310 Cancer Type: breast cancer Dataset: GSE111065 CTCs/CTM Isolation Method: microfluidics immunofluorescence

Gene Information

ncRNA Symbol: AGFG1 Full Name: ArfGAP with FG repeats 1 Category: mRNA Synonyms: HRB|RAB|RIP Chromosome: chr2 Strand: + Coordinate: Start Site(bp): 227472152 End Site(bp): 227561214 Gene Summary: The protein encoded by this gene is related to nucleoporins, a class of proteins that mediate nucleocytoplasmic transport. The encoded protein binds the activation domain of the human immunodeficiency virus Rev protein when Rev is assembled onto its RNA target, and is required for the nuclear export of Rev-directed RNAs. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2008] External Links: Ensembl ID: ENSG00000173744 HGNC ID: HGNC:5175 Entrez Gene: 3267

Expression Profile of AGFG1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES YES hsa-miR-103a-3p YES NO YES hsa-miR-107 YES NO YES hsa-miR-1224-5p YES NO YES hsa-miR-128-3p YES NO YES hsa-miR-1298-5p YES NO YES hsa-miR-130a-3p YES NO YES hsa-miR-130b-3p YES NO YES hsa-miR-141-3p YES NO YES hsa-miR-144-3p YES NO YES hsa-miR-145-5p YES NO YES hsa-miR-148a-3p YES YES YES hsa-miR-148b-3p YES YES YES hsa-miR-152-3p YES YES YES hsa-miR-155-5p YES NO YES hsa-miR-181a-5p YES YES YES hsa-miR-181b-5p YES YES YES hsa-miR-181c-5p YES YES YES hsa-miR-181d-5p YES YES YES hsa-miR-185-5p YES YES NO hsa-miR-186-5p YES NO NO hsa-miR-188-5p YES NO YES hsa-miR-190a-5p YES NO YES hsa-miR-190b YES NO YES hsa-miR-200a-3p YES NO YES hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-217 YES NO YES hsa-miR-224-5p YES YES NO hsa-miR-27a-3p YES NO YES hsa-miR-27b-3p YES NO YES hsa-miR-300 YES NO YES hsa-miR-301a-3p YES NO YES hsa-miR-301b-3p YES NO YES hsa-miR-320a YES NO YES hsa-miR-320b YES NO YES hsa-miR-320c YES NO YES hsa-miR-320d YES NO YES hsa-miR-340-5p YES NO YES hsa-miR-342-3p YES NO YES hsa-miR-374a-5p YES YES NO hsa-miR-374b-5p YES YES NO hsa-miR-381-3p YES NO YES hsa-miR-383-5p YES NO YES hsa-miR-421 YES NO YES hsa-miR-425-5p YES NO YES hsa-miR-429 YES YES YES hsa-miR-452-5p YES NO YES hsa-miR-454-3p YES NO YES hsa-miR-494-3p YES NO YES hsa-miR-495-3p YES YES NO hsa-miR-501-3p YES NO YES hsa-miR-502-3p YES NO YES hsa-miR-543 YES NO YES hsa-miR-655-3p YES NO YES hsa-miR-802 YES NO YES hsa-miR-9-5p YES NO YES Display: