ctcRbase

Entry Detail

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General Information

Database ID: BRCA20669 Cancer Type: breast cancer Dataset: GSE41245 CTCs/CTM Isolation Method: CTC-Chip

Gene Information

ncRNA Symbol: VLDLR Full Name: very low density lipoprotein receptor Category: mRNA Synonyms: CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH Chromosome: chr9 Strand: + Coordinate: Start Site(bp): 2621834 End Site(bp): 2660053 Gene Summary: The low density lipoprotein receptor (LDLR) gene family consists of cell surface proteins involved in receptor-mediated endocytosis of specific ligands. This gene encodes a lipoprotein receptor that is a member of the LDLR family and plays important roles in VLDL-triglyceride metabolism and the reelin signaling pathway. Mutations in this gene cause VLDLR-associated cerebellar hypoplasia. Alternative splicing generates multiple transcript variants encoding distinct isoforms for this gene. [provided by RefSeq, Aug 2009] External Links: Ensembl ID: ENSG00000147852 HGNC ID: HGNC:12698 Entrez Gene: 7436

Expression Profile of VLDLR Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-100-5p YES YES NO hsa-miR-101-3p YES YES YES hsa-miR-106a-5p YES YES YES hsa-miR-106b-5p YES YES YES hsa-miR-1271-5p YES YES YES hsa-miR-1297 YES YES YES hsa-miR-135a-5p YES YES YES hsa-miR-135b-5p YES YES YES hsa-miR-136-5p YES YES NO hsa-miR-137 YES YES NO hsa-miR-141-3p YES YES NO hsa-miR-144-3p YES YES YES hsa-miR-149-5p YES YES YES hsa-miR-17-5p YES YES YES hsa-miR-182-5p YES YES YES hsa-miR-199a-3p YES NO YES hsa-miR-199b-3p YES NO YES hsa-miR-200a-3p YES YES NO hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-20a-5p YES YES YES hsa-miR-20b-5p YES YES YES hsa-miR-219a-5p YES YES YES hsa-miR-22-3p YES YES NO hsa-miR-26a-5p YES YES YES hsa-miR-26b-5p YES YES YES hsa-miR-299-3p YES YES NO hsa-miR-299-5p YES NO YES hsa-miR-300 YES NO YES hsa-miR-302a-3p YES YES YES hsa-miR-302b-3p YES YES YES hsa-miR-302c-3p YES YES YES hsa-miR-302d-3p YES YES YES hsa-miR-302e YES YES YES hsa-miR-320a YES YES YES hsa-miR-320b YES YES YES hsa-miR-320c YES YES YES hsa-miR-320d YES YES YES hsa-miR-326 YES YES YES hsa-miR-330-5p YES YES YES hsa-miR-340-5p YES YES NO hsa-miR-372-3p YES YES YES hsa-miR-373-3p YES YES YES hsa-miR-376c-3p YES YES YES hsa-miR-381-3p YES NO YES hsa-miR-409-5p YES NO YES hsa-miR-423-3p YES NO YES hsa-miR-429 YES YES YES hsa-miR-448 YES YES YES hsa-miR-519d-3p YES YES YES hsa-miR-520a-3p YES YES YES hsa-miR-520b YES YES YES hsa-miR-520c-3p YES YES YES hsa-miR-520d-3p YES YES YES hsa-miR-520e YES YES YES hsa-miR-520f-3p YES NO YES hsa-miR-93-5p YES YES YES hsa-miR-96-5p YES YES YES hsa-miR-99a-5p YES YES NO hsa-miR-99b-5p YES YES NO Display: