ctcRbase

Entry Detail

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General Information

Database ID: PRAD06441 Cancer Type: prostate cancer Dataset: GSE104209 CTCs/CTM Isolation Method: CTC-iChip

Gene Information

ncRNA Symbol: SREK1 Full Name: splicing regulatory glutamic acid and lysine rich protein 1 Category: mRNA Synonyms: SFRS12|SRrp508|SRrp86 Chromosome: chr5 Strand: + Coordinate: Start Site(bp): 66139971 End Site(bp): 66183615 Gene Summary: This gene encodes a member of a family of serine/arginine-rich (SR) splicing proteins containing RNA recognition motif (RRM) domains. The encoded protein interacts with other SR proteins to modulate splice site selection. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jul 2012] External Links: Ensembl ID: ENSG00000153914 HGNC ID: HGNC:17882 Entrez Gene: 140890

Expression Profile of SREK1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES NO YES hsa-let-7b-5p YES NO YES hsa-let-7c-5p YES NO YES hsa-let-7d-5p YES NO YES hsa-let-7e-5p YES NO YES hsa-let-7f-5p YES NO YES hsa-let-7g-5p YES NO YES hsa-let-7i-5p YES NO YES hsa-miR-101-3p YES YES NO hsa-miR-124-3p YES NO YES hsa-miR-128-3p YES YES YES hsa-miR-1297 YES YES NO hsa-miR-132-3p YES YES NO hsa-miR-140-3p YES NO YES hsa-miR-141-3p YES YES YES hsa-miR-144-3p YES YES NO hsa-miR-153-3p YES YES NO hsa-miR-182-5p YES YES YES hsa-miR-200a-3p YES YES YES hsa-miR-212-3p YES YES NO hsa-miR-218-5p YES NO YES hsa-miR-219a-5p YES YES YES hsa-miR-223-3p YES YES YES hsa-miR-25-3p YES YES NO hsa-miR-26a-5p YES YES NO hsa-miR-26b-5p YES YES NO hsa-miR-27a-3p YES YES YES hsa-miR-27b-3p YES YES YES hsa-miR-300 YES YES NO hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-32-5p YES YES NO hsa-miR-338-3p YES YES NO hsa-miR-33a-5p YES YES NO hsa-miR-33b-5p YES YES NO hsa-miR-361-5p YES YES YES hsa-miR-363-3p YES YES NO hsa-miR-367-3p YES YES NO hsa-miR-376c-3p YES YES YES hsa-miR-381-3p YES YES NO hsa-miR-421 YES NO YES hsa-miR-448 YES YES NO hsa-miR-487a-3p YES NO YES hsa-miR-495-3p YES YES NO hsa-miR-501-3p YES NO YES hsa-miR-502-3p YES NO YES hsa-miR-506-3p YES NO YES hsa-miR-543 YES YES NO hsa-miR-92a-3p YES YES NO hsa-miR-92b-3p YES YES NO hsa-miR-98-5p YES NO YES Display: