ctcRbase

Entry Detail

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General Information

Database ID: PRAD09683 Cancer Type: prostate cancer Dataset: GSE67980 CTCs/CTM Isolation Method: CTC-iChip

Gene Information

ncRNA Symbol: AFDN Full Name: afadin, adherens junction formation factor Category: mRNA Synonyms: AF6|MLL-AF6|MLLT4|l-afadin Chromosome: chr6 Strand: + Coordinate: Start Site(bp): 167826922 End Site(bp): 167972023 Gene Summary: This gene encodes a multi-domain protein involved in signaling and organization of cell junctions during embryogenesis. It has also been identified as the fusion partner of acute lymphoblastic leukemia (ALL-1) gene, involved in acute myeloid leukemias with t(6;11)(q27;q23) translocation. Alternatively spliced transcript variants encoding different isoforms have been described for this gene, however, not all have been fully characterized.[provided by RefSeq, May 2011] External Links: Ensembl ID: ENSG00000130396 HGNC ID: HGNC:7137 Entrez Gene: 4301

Expression Profile of AFDN Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES NO hsa-let-7b-5p YES YES NO hsa-let-7c-5p YES YES NO hsa-let-7d-5p YES YES NO hsa-let-7e-5p YES YES NO hsa-let-7f-5p YES YES NO hsa-let-7g-5p YES YES NO hsa-let-7i-5p YES YES NO hsa-miR-101-3p YES YES YES hsa-miR-10a-5p YES YES NO hsa-miR-10b-5p YES YES NO hsa-miR-132-3p YES YES NO hsa-miR-139-5p YES YES NO hsa-miR-144-3p YES YES YES hsa-miR-154-5p YES YES NO hsa-miR-183-5p YES YES NO hsa-miR-185-5p YES YES NO hsa-miR-212-3p YES YES NO hsa-miR-216a-5p YES YES NO hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-24-3p YES YES NO hsa-miR-300 YES YES NO hsa-miR-329-3p YES NO NO hsa-miR-340-5p YES YES NO hsa-miR-362-3p YES NO NO hsa-miR-371a-5p YES YES NO hsa-miR-376a-3p YES YES NO hsa-miR-376b-3p YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-383-5p YES YES NO hsa-miR-410-3p YES YES NO hsa-miR-421 YES YES NO hsa-miR-433-3p YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-542-3p YES YES NO hsa-miR-543 YES YES NO hsa-miR-653-5p YES YES NO hsa-miR-875-5p YES YES NO hsa-miR-98-5p YES YES NO Display: