ctcRbase

Entry Detail

---



General Information

Database ID: SKCM01462 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: VTA1 Full Name: vesicle trafficking 1 Category: mRNA Synonyms: C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 Chromosome: chr6 Strand: + Coordinate: Start Site(bp): 142147162 End Site(bp): 142224689 Gene Summary: C6ORF55 encodes a protein involved in trafficking of the multivesicular body, an endosomal compartment involved in sorting membrane proteins for degradation in lysosomes (Ward et al., 2005 [PubMed 15644320]).[supplied by OMIM, Mar 2008] External Links: Ensembl ID: ENSG00000009844 HGNC ID: HGNC:20954 Entrez Gene: 51534

Expression Profile of VTA1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-10a-5p YES YES NO hsa-miR-10b-5p YES YES NO hsa-miR-1298-5p YES NO YES hsa-miR-149-5p YES YES NO hsa-miR-150-5p YES YES NO hsa-miR-15a-5p YES YES YES hsa-miR-15b-5p YES YES YES hsa-miR-16-5p YES YES YES hsa-miR-194-5p YES YES NO hsa-miR-195-5p YES YES YES hsa-miR-196a-5p YES YES NO hsa-miR-196b-5p YES YES NO hsa-miR-204-5p YES YES NO hsa-miR-211-5p YES YES NO hsa-miR-214-3p YES NO NO hsa-miR-21-5p YES YES YES hsa-miR-29a-3p YES YES YES hsa-miR-29b-3p YES YES YES hsa-miR-29c-3p YES YES YES hsa-miR-338-3p YES YES NO hsa-miR-340-5p YES YES NO hsa-miR-362-5p YES NO YES hsa-miR-374a-5p YES YES NO hsa-miR-374b-5p YES YES NO hsa-miR-377-3p YES YES NO hsa-miR-382-5p YES YES NO hsa-miR-424-5p YES YES YES hsa-miR-431-5p YES YES NO hsa-miR-485-5p YES YES YES hsa-miR-486-5p YES YES NO hsa-miR-497-5p YES YES YES hsa-miR-590-5p YES YES YES hsa-miR-655-3p YES NO YES Display: