ctcRbase

Entry Detail

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General Information

Database ID: SKCM01549 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: CTHRC1 Full Name: collagen triple helix repeat containing 1 Category: mRNA Synonyms: - Chromosome: chr8 Strand: + Coordinate: Start Site(bp): 103371515 End Site(bp): 103382997 Gene Summary: This locus encodes a protein that may play a role in the cellular response to arterial injury through involvement in vascular remodeling. Mutations at this locus have been associated with Barrett esophagus and esophageal adenocarcinoma. Alternatively spliced transcript variants have been described. [provided by RefSeq, Jan 2012] External Links: Ensembl ID: ENSG00000164932 HGNC ID: HGNC:18831 Entrez Gene: 115908

Expression Profile of CTHRC1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES NO hsa-let-7b-5p YES YES NO hsa-let-7c-5p YES YES NO hsa-let-7d-5p YES YES NO hsa-let-7e-5p YES YES NO hsa-let-7f-5p YES YES NO hsa-let-7g-5p YES YES NO hsa-let-7i-5p YES YES NO hsa-miR-132-3p YES YES NO hsa-miR-155-5p YES YES NO hsa-miR-212-3p YES YES NO hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-9-5p YES YES NO hsa-miR-98-5p YES YES NO Display: