ctcRbase

Entry Detail

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General Information

Database ID: SKCM01771 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: CDK5RAP1 Full Name: CDK5 regulatory subunit associated protein 1 Category: mRNA Synonyms: C20orf34|C42|CGI-05|HSPC167 Chromosome: chr20 Strand: - Coordinate: Start Site(bp): 33358839 End Site(bp): 33401561 Gene Summary: This gene encodes a regulator of cyclin-dependent kinase 5 activity. This protein has also been reported to modify RNA by adding a methylthio-group and may thus have a dual function as an RNA methylthiotransferase and as an inhibitor of cyclin-dependent kinase 5 activity. Alternative splicing results in multiple transcript variants that encode different isoforms. [provided by RefSeq, May 2013] External Links: Ensembl ID: ENSG00000101391 HGNC ID: HGNC:15880 Entrez Gene: 51654

Expression Profile of CDK5RAP1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-15a-5p YES YES NO hsa-miR-15b-5p YES YES NO hsa-miR-16-5p YES YES NO hsa-miR-195-5p YES YES NO hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-376c-3p YES YES NO hsa-miR-424-5p YES YES NO hsa-miR-497-5p YES YES NO hsa-miR-503-5p YES YES NO Display: