ctcRbase

Entry Detail

General Information

Database ID:	SKCM02233
Cancer Type:	melanoma
Dataset:	GSE38495
CTCs/CTM Isolation Method:	immunomagnetic purification

Gene Information

ncRNA Symbol:

NUDT4

Full Name:

nudix hydrolase 4

Category:

mRNA

Synonyms:

Chromosome:

chr12

Strand:

Coordinate:

Start Site(bp):

93377883

End Site(bp):

93408146

Gene Summary:

The protein encoded by this gene regulates the turnover of diphosphoinositol polyphosphates. The turnover of these high-energy diphosphoinositol polyphosphates represents a molecular switching activity with important regulatory consequences. Molecular switching by diphosphoinositol polyphosphates may contribute to regulating intracellular trafficking. Several alternatively spliced transcript variants have been described, but the full-length nature of some variants has not been determined. Isoforms DIPP2alpha and DIPP2beta are distinguishable from each other solely by DIPP2beta possessing one additional amino acid due to intron boundary skidding in alternate splicing. [provided by RefSeq, Jul 2008]

External Links:

Ensembl ID:	ENSG00000173598
HGNC ID:	HGNC:8051
Entrez Gene:	11163

Expression Profile of NUDT4 Gene

Regulatory Relationship

mRNA targets:

miRNA targets:

miRNA Name	PITA	miRanda	RNAhybrid
hsa-miR-135a-5p	YES	YES	YES
hsa-miR-135b-5p	YES	YES	YES
hsa-miR-145-5p	YES	YES	YES
hsa-miR-155-5p	YES	NO	YES
hsa-miR-181a-5p	YES	YES	NO
hsa-miR-181b-5p	YES	YES	NO
hsa-miR-181c-5p	YES	YES	NO
hsa-miR-181d-5p	YES	YES	NO
hsa-miR-183-5p	YES	YES	YES
hsa-miR-18a-5p	YES	YES	NO
hsa-miR-18b-5p	YES	YES	NO
hsa-miR-200b-3p	YES	YES	NO
hsa-miR-200c-3p	YES	YES	NO
hsa-miR-22-3p	YES	YES	YES
hsa-miR-296-3p	YES	YES	NO
hsa-miR-300	YES	NO	YES
hsa-miR-301a-3p	YES	YES	NO
hsa-miR-330-3p	YES	NO	YES
hsa-miR-335-5p	YES	YES	NO
hsa-miR-340-5p	YES	NO	YES
hsa-miR-376c-3p	YES	NO	YES
hsa-miR-381-3p	YES	NO	YES
hsa-miR-411-5p	YES	YES	YES
hsa-miR-425-5p	YES	YES	NO
hsa-miR-429	YES	YES	NO
hsa-miR-455-5p	YES	YES	NO
hsa-miR-93-5p	YES	YES	NO

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