ctcRbase

Entry Detail

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General Information

Database ID: SKCM02326 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SUPT16H Full Name: SPT16 homolog, facilitates chromatin remodeling subunit Category: mRNA Synonyms: CDC68|FACTP140|SPT16|SPT16/CDC68 Chromosome: chr14 Strand: - Coordinate: Start Site(bp): 21351472 End Site(bp): 21384266 Gene Summary: Transcription of protein-coding genes can be reconstituted on naked DNA with only the general transcription factors and RNA polymerase II. However, this minimal system cannot transcribe DNA packaged into chromatin, indicating that accessory factors may facilitate access to DNA. One such factor, FACT (facilitates chromatin transcription), interacts specifically with histones H2A/H2B to effect nucleosome disassembly and transcription elongation. FACT is composed of an 80 kDa subunit and a 140 kDa subunit; this gene encodes the 140 kDa subunit. [provided by RefSeq, Feb 2009] External Links: Ensembl ID: ENSG00000092201 HGNC ID: HGNC:11465 Entrez Gene: 11198

Expression Profile of SUPT16H Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1271-5p YES YES NO hsa-miR-1297 YES YES NO hsa-miR-133a-3p YES YES YES hsa-miR-133b YES YES YES hsa-miR-149-5p YES YES NO hsa-miR-15a-5p YES YES YES hsa-miR-15b-5p YES YES YES hsa-miR-16-5p YES YES YES hsa-miR-195-5p YES YES YES hsa-miR-224-5p YES YES YES hsa-miR-26a-5p YES YES NO hsa-miR-26b-5p YES YES NO hsa-miR-31-5p YES YES YES hsa-miR-320a YES YES YES hsa-miR-320b YES YES YES hsa-miR-320c YES YES YES hsa-miR-320d YES YES YES hsa-miR-33a-5p YES YES NO hsa-miR-33b-5p YES YES NO hsa-miR-421 YES YES YES hsa-miR-424-5p YES YES YES hsa-miR-431-5p YES YES NO hsa-miR-485-5p YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-495-3p YES YES YES hsa-miR-496 YES YES NO hsa-miR-497-5p YES YES YES hsa-miR-542-3p YES YES NO hsa-miR-5688 NO NO YES hsa-miR-582-5p YES NO YES hsa-miR-615-3p YES YES NO hsa-miR-875-5p YES YES NO hsa-miR-96-5p YES YES NO Display: