ctcRbase

Entry Detail

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General Information

Database ID: SKCM02558 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: CTBP2 Full Name: C-terminal binding protein 2 Category: mRNA Synonyms: - Chromosome: chr10 Strand: - Coordinate: Start Site(bp): 124984317 End Site(bp): 125161170 Gene Summary: This gene produces alternative transcripts encoding two distinct proteins. One protein is a transcriptional repressor, while the other isoform is a major component of specialized synapses known as synaptic ribbons. Both proteins contain a NAD+ binding domain similar to NAD+-dependent 2-hydroxyacid dehydrogenases. A portion of the 3' untranslated region was used to map this gene to chromosome 21q21.3; however, it was noted that similar loci elsewhere in the genome are likely. Blast analysis shows that this gene is present on chromosome 10. Several transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Feb 2014] External Links: Ensembl ID: ENSG00000175029 HGNC ID: HGNC:2495 Entrez Gene: 1488

Expression Profile of CTBP2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES YES hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-129-5p YES YES NO hsa-miR-133a-3p YES YES YES hsa-miR-133b YES YES YES hsa-miR-141-3p YES YES YES hsa-miR-144-3p YES YES YES hsa-miR-153-3p YES YES NO hsa-miR-17-5p YES YES NO hsa-miR-200a-3p YES YES YES hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-217 YES YES NO hsa-miR-23a-3p YES YES NO hsa-miR-23b-3p YES YES NO hsa-miR-300 YES NO YES hsa-miR-340-5p YES YES NO hsa-miR-342-3p YES YES YES hsa-miR-370-3p YES YES YES hsa-miR-377-3p YES YES NO hsa-miR-381-3p YES NO YES hsa-miR-448 YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-519d-3p YES YES NO hsa-miR-758-3p YES YES NO hsa-miR-802 YES NO YES hsa-miR-876-5p YES YES NO hsa-miR-93-5p YES YES NO Display: