Entry Detail



General Information

Database ID:SKCM02915
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:BRCA1
Full Name:BRCA1, DNA repair associated
Category:mRNA
Synonyms:BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53
Chromosome:chr17
Strand:-
Coordinate:
Start Site(bp):43044295End Site(bp):43170245
Gene Summary:This gene encodes a nuclear phosphoprotein that plays a role in maintaining genomic stability, and it also acts as a tumor suppressor. The encoded protein combines with other tumor suppressors, DNA damage sensors, and signal transducers to form a large multi-subunit protein complex known as the BRCA1-associated genome surveillance complex (BASC). This gene product associates with RNA polymerase II, and through the C-terminal domain, also interacts with histone deacetylase complexes. This protein thus plays a role in transcription, DNA repair of double-stranded breaks, and recombination. Mutations in this gene are responsible for approximately 40% of inherited breast cancers and more than 80% of inherited breast and ovarian cancers. Alternative splicing plays a role in modulating the subcellular localization and physiological function of this gene. Many alternatively spliced transcript variants, some of which are disease-associated mutations, have been described for this gene, but the full-length natures of only some of these variants has been described. A related pseudogene, which is also located on chromosome 17, has been identified. [provided by RefSeq, May 2009]
External Links:
Ensembl ID:ENSG00000012048
HGNC ID:HGNC:1100
Entrez Gene:672



Expression Profile of BRCA1 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-132-3p
YES
YES
YES
hsa-miR-1-3p
YES
YES
NO
hsa-miR-141-3p
YES
YES
NO
hsa-miR-186-5p
YES
YES
NO
hsa-miR-200a-3p
YES
YES
NO
hsa-miR-206
YES
YES
NO
hsa-miR-212-3p
YES
YES
YES
hsa-miR-216b-5p
YES
YES
NO
hsa-miR-224-5p
YES
YES
NO
hsa-miR-543
YES
YES
NO
hsa-miR-613
YES
YES
NO
hsa-miR-7-5p
YES
YES
YES
Display: