ctcRbase

Entry Detail

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General Information

Database ID: SKCM02918 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: IQCB1 Full Name: IQ motif containing B1 Category: mRNA Synonyms: NPHP5|PIQ|SLSN5 Chromosome: chr3 Strand: - Coordinate: Start Site(bp): 121769763 End Site(bp): 121835079 Gene Summary: This gene encodes a nephrocystin protein that interacts with calmodulin and the retinitis pigmentosa GTPase regulator protein. The encoded protein has a central coiled-coil region and two calmodulin-binding IQ domains. It is localized to the primary cilia of renal epithelial cells and connecting cilia of photoreceptor cells. The protein is thought to play a role in ciliary function. Defects in this gene result in Senior-Loken syndrome type 5. Alternative splicing results in multiple transcript variants. A pseudogene of this gene is found on chromosome 6. [provided by RefSeq, Jan 2016] External Links: Ensembl ID: ENSG00000173226 HGNC ID: HGNC:28949 Entrez Gene: 9657

Expression Profile of IQCB1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES YES hsa-let-7b-5p YES YES YES hsa-let-7c-5p YES YES YES hsa-let-7d-5p YES YES YES hsa-let-7e-5p YES YES YES hsa-let-7f-5p YES YES YES hsa-let-7g-5p YES YES YES hsa-let-7i-5p YES YES YES hsa-miR-147a YES NO NO hsa-miR-186-5p YES YES NO hsa-miR-216a-5p YES YES NO hsa-miR-216b-5p YES YES NO hsa-miR-30a-5p YES YES NO hsa-miR-30b-5p YES YES NO hsa-miR-30c-5p YES YES NO hsa-miR-30d-5p YES YES NO hsa-miR-30e-5p YES YES NO hsa-miR-328-3p YES YES NO hsa-miR-338-3p YES YES NO hsa-miR-410-3p YES YES NO hsa-miR-599 YES YES NO hsa-miR-98-5p YES YES YES Display: