ctcRbase

Entry Detail

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General Information

Database ID: SKCM03010 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SMG1 Full Name: SMG1, nonsense mediated mRNA decay associated PI3K related kinase Category: mRNA Synonyms: 61E3.4|ATX|LIP Chromosome: chr16 Strand: - Coordinate: Start Site(bp): 18804853 End Site(bp): 18926454 Gene Summary: This gene encodes a protein involved in nonsense-mediated mRNA decay (NMD) as part of the mRNA surveillance complex. The protein has kinase activity and is thought to function in NMD by phosphorylating the regulator of nonsense transcripts 1 protein. Alternatively spliced transcript variants have been described, but their full-length nature has yet to be determined. [provided by RefSeq, Mar 2013] External Links: Ensembl ID: ENSG00000157106 HGNC ID: HGNC:30045 Entrez Gene: 23049

Expression Profile of SMG1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-122-5p YES YES NO hsa-miR-125a-5p YES YES YES hsa-miR-125b-5p YES YES YES hsa-miR-129-5p YES YES NO hsa-miR-136-5p YES YES YES hsa-miR-138-5p YES YES YES hsa-miR-1-3p YES NO YES hsa-miR-142-3p YES YES YES hsa-miR-186-5p YES YES NO hsa-miR-188-5p YES NO YES hsa-miR-18a-5p YES NO YES hsa-miR-18b-5p YES NO YES hsa-miR-197-3p YES YES NO hsa-miR-19a-3p YES YES YES hsa-miR-19b-3p YES YES YES hsa-miR-206 YES NO YES hsa-miR-216b-5p YES YES NO hsa-miR-223-3p YES YES NO hsa-miR-25-3p YES YES YES hsa-miR-28-5p YES YES NO hsa-miR-320a YES YES YES hsa-miR-320b YES YES YES hsa-miR-320c YES YES YES hsa-miR-320d YES YES YES hsa-miR-32-5p YES YES YES hsa-miR-329-3p YES YES NO hsa-miR-335-5p YES YES YES hsa-miR-33a-5p YES YES YES hsa-miR-33b-5p YES YES YES hsa-miR-340-5p YES YES NO hsa-miR-361-5p YES YES NO hsa-miR-362-3p YES YES NO hsa-miR-362-5p YES NO YES hsa-miR-363-3p YES YES YES hsa-miR-367-3p YES YES YES hsa-miR-369-3p YES NO YES hsa-miR-376c-3p YES YES NO hsa-miR-382-5p YES YES NO hsa-miR-384 YES YES YES hsa-miR-421 YES YES NO hsa-miR-425-5p YES YES NO hsa-miR-433-3p YES YES NO hsa-miR-450a-5p YES YES NO hsa-miR-455-3p YES NO YES hsa-miR-485-5p YES YES YES hsa-miR-543 YES YES NO hsa-miR-613 YES NO YES hsa-miR-708-5p YES YES NO hsa-miR-7-5p YES YES YES hsa-miR-760 YES NO YES hsa-miR-873-5p YES YES YES hsa-miR-874-3p YES YES YES hsa-miR-92a-3p YES YES YES hsa-miR-92b-3p YES YES YES Display: