ctcRbase

Entry Detail

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General Information

Database ID: SKCM03054 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: AGPS Full Name: alkylglycerone phosphate synthase Category: mRNA Synonyms: ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3 Chromosome: chr2 Strand: + Coordinate: Start Site(bp): 177392644 End Site(bp): 177559299 Gene Summary: This gene is a member of the FAD-binding oxidoreductase/transferase type 4 family. It encodes a protein that catalyzes the second step of ether lipid biosynthesis in which acyl-dihydroxyacetonephosphate (DHAP) is converted to alkyl-DHAP by the addition of a long chain alcohol and the removal of a long-chain acid anion. The protein is localized to the inner aspect of the peroxisomal membrane and requires FAD as a cofactor. Mutations in this gene have been associated with rhizomelic chondrodysplasia punctata, type 3 and Zellweger syndrome. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000018510 HGNC ID: HGNC:327 Entrez Gene: 8540

Expression Profile of AGPS Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-141-3p NO YES YES hsa-miR-154-5p YES YES NO hsa-miR-200a-3p NO YES YES hsa-miR-302a-3p NO YES YES hsa-miR-302b-3p NO YES YES hsa-miR-302c-3p NO YES YES hsa-miR-302d-3p NO YES YES hsa-miR-302e NO YES YES hsa-miR-320a NO YES YES hsa-miR-320b NO YES YES hsa-miR-320c NO YES YES hsa-miR-320d NO YES YES hsa-miR-340-5p NO YES YES hsa-miR-372-3p NO YES YES hsa-miR-373-3p NO YES YES hsa-miR-410-3p YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-520a-3p NO YES YES hsa-miR-520b NO YES YES hsa-miR-520c-3p NO YES YES hsa-miR-520d-3p NO YES YES hsa-miR-520e NO YES YES hsa-miR-7-5p NO YES YES Display: