Entry Detail



General Information

Database ID:SKCM03074
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:TRIM5
Full Name:tripartite motif containing 5
Category:mRNA
Synonyms:RNF88|TRIM5alpha
Chromosome:chr11
Strand:-
Coordinate:
Start Site(bp):5663557End Site(bp):5938619
Gene Summary:The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein forms homo-oligomers via the coilel-coil region and localizes to cytoplasmic bodies. It appears to function as a E3 ubiquitin-ligase and ubiqutinates itself to regulate its subcellular localization. It may play a role in retroviral restriction. Multiple alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Dec 2009]
External Links:
Ensembl ID:ENSG00000132256
HGNC ID:HGNC:16276
Entrez Gene:85363



Expression Profile of TRIM5 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-183-5p
YES
YES
NO
hsa-miR-223-3p
YES
YES
NO
hsa-miR-300
YES
YES
NO
hsa-miR-335-5p
YES
YES
NO
hsa-miR-381-3p
YES
YES
NO
hsa-miR-653-5p
YES
YES
NO
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