ctcRbase

Entry Detail

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General Information

Database ID: SKCM03259 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SNX1 Full Name: sorting nexin 1 Category: mRNA Synonyms: HsT17379|VPS5 Chromosome: chr15 Strand: + Coordinate: Start Site(bp): 64094123 End Site(bp): 64146090 Gene Summary: This gene encodes a member of the sorting nexin family. Members of this family contain a phox (PX) domain, which is a phosphoinositide binding domain, and are involved in intracellular trafficking. This endosomal protein regulates the cell-surface expression of epidermal growth factor receptor. This protein also has a role in sorting protease-activated receptor-1 from early endosomes to lysosomes. This protein may form oligomeric complexes with family members. This gene results in three transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000028528 HGNC ID: HGNC:11172 Entrez Gene: 6642

Expression Profile of SNX1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES NO YES hsa-let-7b-5p YES NO YES hsa-let-7c-5p YES NO YES hsa-let-7d-5p YES NO YES hsa-let-7e-5p YES NO YES hsa-let-7f-5p YES NO YES hsa-let-7g-5p YES NO YES hsa-let-7i-5p YES NO YES hsa-miR-103a-3p YES NO NO hsa-miR-107 YES NO NO hsa-miR-125a-5p YES YES NO hsa-miR-125b-5p YES YES NO hsa-miR-15a-5p YES NO YES hsa-miR-15b-5p YES NO YES hsa-miR-16-5p YES NO YES hsa-miR-183-5p YES NO YES hsa-miR-194-5p YES NO YES hsa-miR-195-5p YES NO YES hsa-miR-30a-5p YES NO YES hsa-miR-30b-5p YES NO YES hsa-miR-30c-5p YES NO YES hsa-miR-30d-5p YES NO YES hsa-miR-30e-5p YES NO YES hsa-miR-31-5p YES YES NO hsa-miR-369-3p YES NO YES hsa-miR-421 YES YES NO hsa-miR-424-5p YES NO YES hsa-miR-497-5p YES NO YES hsa-miR-499a-5p YES YES NO hsa-miR-655-3p YES NO YES hsa-miR-98-5p YES NO YES Display: