ctcRbase

Entry Detail

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General Information

Database ID: SKCM03429 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SH3PXD2B Full Name: SH3 and PX domains 2B Category: mRNA Synonyms: FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 Chromosome: chr5 Strand: - Coordinate: Start Site(bp): 172325000 End Site(bp): 172454523 Gene Summary: This gene encodes an adapter protein that is characterized by a PX domain and four Src homology 3 domains. The encoded protein is required for podosome formation and is involved in cell adhesion and migration of numerous cell types. Mutations in this gene are the cause of Frank-ter Haar syndrome (FTHS), and also Borrone Dermato-Cardio-Skeletal (BDCS) syndrome. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Apr 2015] External Links: Ensembl ID: ENSG00000174705 HGNC ID: HGNC:29242 Entrez Gene: 285590

Expression Profile of SH3PXD2B Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1271-5p YES YES YES hsa-miR-133a-3p YES NO YES hsa-miR-133b YES NO YES hsa-miR-137 YES NO YES hsa-miR-1-3p YES YES YES hsa-miR-182-5p YES NO YES hsa-miR-206 YES YES YES hsa-miR-299-3p YES YES NO hsa-miR-29a-3p YES NO YES hsa-miR-29b-3p YES NO YES hsa-miR-29c-3p YES NO YES hsa-miR-382-5p YES YES NO hsa-miR-491-5p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-613 YES YES YES hsa-miR-9-5p YES NO YES hsa-miR-96-5p YES YES YES Display: