ctcRbase

Entry Detail

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General Information

Database ID: SKCM03526 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: HNRNPA0 Full Name: heterogeneous nuclear ribonucleoprotein A0 Category: mRNA Synonyms: HNRPA0 Chromosome: chr5 Strand: - Coordinate: Start Site(bp): 137745651 End Site(bp): 137754376 Gene Summary: This gene belongs to the A/B subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has two repeats of quasi-RRM domains that bind RNAs, followed by a glycine-rich C-terminus. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000177733 HGNC ID: HGNC:5030 Entrez Gene: 10949

Expression Profile of HNRNPA0 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES YES hsa-miR-129-5p YES YES NO hsa-miR-132-3p YES YES NO hsa-miR-153-3p YES YES YES hsa-miR-154-5p YES YES NO hsa-miR-181a-5p YES NO YES hsa-miR-181b-5p YES NO YES hsa-miR-181c-5p YES NO YES hsa-miR-181d-5p YES NO YES hsa-miR-185-5p YES YES YES hsa-miR-186-5p YES YES NO hsa-miR-188-5p YES NO YES hsa-miR-190a-5p YES NO YES hsa-miR-190b YES NO YES hsa-miR-194-5p YES NO YES hsa-miR-212-3p YES YES NO hsa-miR-221-3p YES NO YES hsa-miR-222-3p YES NO YES hsa-miR-25-3p YES NO YES hsa-miR-299-3p YES YES YES hsa-miR-30a-5p YES YES NO hsa-miR-30b-5p YES YES NO hsa-miR-30c-5p YES YES NO hsa-miR-30d-5p YES YES NO hsa-miR-30e-5p YES YES NO hsa-miR-32-5p YES NO YES hsa-miR-340-5p YES NO YES hsa-miR-363-3p YES NO YES hsa-miR-367-3p YES NO YES hsa-miR-370-3p YES YES NO hsa-miR-375 YES YES NO hsa-miR-376a-3p YES YES YES hsa-miR-376b-3p YES YES YES hsa-miR-410-3p YES YES YES hsa-miR-421 YES NO YES hsa-miR-483-3p YES NO YES hsa-miR-491-5p YES NO YES hsa-miR-505-3p YES YES NO hsa-miR-758-3p YES YES YES hsa-miR-876-5p YES YES YES hsa-miR-92a-3p YES NO YES hsa-miR-92b-3p YES NO YES Display: