ctcRbase

Entry Detail

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General Information

Database ID: SKCM03546 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: GIGYF2 Full Name: GRB10 interacting GYF protein 2 Category: mRNA Synonyms: GYF2|PARK11|PERQ2|PERQ3|TNRC15 Chromosome: chr2 Strand: + Coordinate: Start Site(bp): 232697299 End Site(bp): 232860575 Gene Summary: This gene contains CAG trinucleotide repeats and encodes a protein containing several stretches of polyglutamine residues. The encoded protein may be involved in the regulation of tyrosine kinase receptor signaling. This gene is located in a chromosomal region that was genetically linked to Parkinson disease type 11, and mutations in this gene were thought to be causative for this disease. However, more recent studies in different populations have been unable to replicate this association. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2013] External Links: Ensembl ID: ENSG00000204120 HGNC ID: HGNC:11960 Entrez Gene: 26058

Expression Profile of GIGYF2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-122-5p YES YES NO hsa-miR-1321 YES NO NO hsa-miR-143-3p YES YES YES hsa-miR-18a-5p YES YES NO hsa-miR-18b-5p YES YES NO hsa-miR-216b-5p YES YES NO hsa-miR-217 NO YES YES hsa-miR-22-3p YES YES NO hsa-miR-224-5p YES YES NO hsa-miR-25-3p YES NO YES hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-31-5p YES YES NO hsa-miR-32-5p YES NO YES hsa-miR-329-3p YES NO NO hsa-miR-330-3p YES NO YES hsa-miR-361-5p YES YES NO hsa-miR-362-3p YES NO NO hsa-miR-363-3p YES NO YES hsa-miR-367-3p YES NO YES hsa-miR-374a-5p YES YES NO hsa-miR-374b-5p YES YES NO hsa-miR-376a-3p YES YES NO hsa-miR-376b-3p YES YES NO hsa-miR-433-3p YES YES NO hsa-miR-874-3p YES YES NO hsa-miR-92a-3p YES NO YES hsa-miR-92b-3p YES NO YES Display: