ctcRbase

Entry Detail

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General Information

Database ID: SKCM03612 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: RERE Full Name: arginine-glutamic acid dipeptide repeats Category: mRNA Synonyms: ARG|ARP|ATN1L|DNB1|NEDBEH Chromosome: chr1 Strand: - Coordinate: Start Site(bp): 8352397 End Site(bp): 8817643 Gene Summary: This gene encodes a member of the atrophin family of arginine-glutamic acid (RE) dipeptide repeat-containing proteins. The encoded protein co-localizes with a transcription factor in the nucleus, and its overexpression triggers apoptosis. A similar protein in mouse associates with histone deacetylase and is thought to function as a transcriptional co-repressor during embryonic development. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000142599 HGNC ID: HGNC:9965 Entrez Gene: 473

Expression Profile of RERE Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-124-3p YES NO YES hsa-miR-128-3p YES YES YES hsa-miR-129-5p YES YES NO hsa-miR-142-3p NO YES YES hsa-miR-142-5p YES NO YES hsa-miR-181a-5p YES YES NO hsa-miR-181b-5p YES YES NO hsa-miR-181c-5p YES YES NO hsa-miR-181d-5p YES YES NO hsa-miR-185-5p YES YES YES hsa-miR-186-5p YES YES NO hsa-miR-199a-5p YES YES NO hsa-miR-199b-5p YES YES NO hsa-miR-19a-3p YES YES NO hsa-miR-19b-3p YES YES NO hsa-miR-200b-3p YES YES NO hsa-miR-200c-3p YES YES NO hsa-miR-204-5p YES YES YES hsa-miR-211-5p YES NO YES hsa-miR-216a-5p YES NO YES hsa-miR-216b-5p YES NO YES hsa-miR-224-5p YES YES YES hsa-miR-29a-3p YES NO YES hsa-miR-29b-3p YES NO YES hsa-miR-29c-3p YES NO YES hsa-miR-329-3p YES NO NO hsa-miR-340-5p YES YES YES hsa-miR-362-3p YES NO NO hsa-miR-384 YES YES NO hsa-miR-410-3p YES YES YES hsa-miR-421 YES YES YES hsa-miR-429 YES YES NO hsa-miR-452-5p YES NO YES hsa-miR-455-3p YES NO NO hsa-miR-494-3p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-496 YES YES NO hsa-miR-7-5p YES YES NO hsa-miR-9-5p YES NO YES Display: