Entry Detail



General Information

Database ID:SKCM03667
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:RPA1
Full Name:replication protein A1
Category:mRNA
Synonyms:HSSB|MST075|REPA1|RF-A|RP-A|RPA70
Chromosome:chr17
Strand:+
Coordinate:
Start Site(bp):1829702End Site(bp):1900082
Gene Summary:This gene encodes the largest subunit of the heterotrimeric Replication Protein A (RPA) complex, which binds to single-stranded DNA (ssDNA), forming a nucleoprotein complex that plays an important role in DNA metabolism, being involved in DNA replication, repair, recombination, telomere maintenance, and co-ordinating the cellular response to DNA damage through activation of the ataxia telangiectasia and Rad3-related protein (ATR) kinase. The nucleoprotein complex protects the single-stranded DNA from nucleases, prevents formation of secondary structures that would interfere with repair, and co-ordinates the recruitment and departure of different genome maintenance factors. This subunit contains four oligonucleotide/oligosaccharide-binding (OB) domains, though the majority of ssDNA binding occurs in two of these domains. The heterotrimeric complex has two different modes of ssDNA binding, a low-affinity and high-affinity mode, determined by which ssDNA binding domains are utilized. The different binding modes differ in the length of DNA bound and in the proteins with which it interacts, thereby playing a role in regulating different genomic maintenance pathways. [provided by RefSeq, Sep 2017]
External Links:
Ensembl ID:ENSG00000132383
HGNC ID:HGNC:10289
Entrez Gene:6117



Expression Profile of RPA1 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-103a-3p
YES
YES
NO
hsa-miR-107
YES
YES
NO
hsa-miR-1-3p
YES
YES
NO
hsa-miR-206
YES
YES
NO
hsa-miR-335-5p
YES
YES
NO
hsa-miR-361-5p
YES
YES
NO
hsa-miR-613
YES
YES
NO
hsa-miR-625-5p
YES
NO
NO
hsa-miR-7-5p
YES
YES
NO
hsa-miR-876-5p
YES
YES
NO
Display: