Entry Detail



General Information

Database ID:SKCM03713
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:RBMXL1
Full Name:RBMX like 1
Category:mRNA
Synonyms:RBM1
Chromosome:chr1
Strand:-
Coordinate:
Start Site(bp):88979456End Site(bp):88992960
Gene Summary:This gene represents a retrogene of RNA binding motif protein, X-linked (RBMX), which is located on chromosome X. While all introns in the coding sequence have been processed out compared to the RBMX locus, the ORF is intact and there is specific evidence for transcription at this location. The preservation of the ORF by purifying selection in all Old World monkeys carrying it suggests that this locus is likely to be functional, possibly during male meiosis when X chromosomal genes are silenced or during haploid stages of spermatogenesis. This gene shares 5' exon structure with the cysteine conjugate-beta lyase 2 locus on chromosome 1, but the coding sequences are non-overlapping. Alternative splicing results in two transcript variants. [provided by RefSeq, Jun 2009]
External Links:
Ensembl ID:ENSG00000213516
HGNC ID:HGNC:25073
Entrez Gene:494115



Expression Profile of RBMXL1 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-133a-3p
YES
YES
YES
hsa-miR-133b
YES
YES
YES
hsa-miR-141-3p
YES
YES
NO
hsa-miR-200a-3p
YES
YES
NO
hsa-miR-338-3p
YES
YES
NO
hsa-miR-346
YES
YES
NO
hsa-miR-382-5p
YES
YES
NO
hsa-miR-543
YES
YES
NO
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