Entry Detail



General Information

Database ID:SKCM03775
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:MSH6
Full Name:mutS homolog 6
Category:mRNA
Synonyms:GTBP|GTMBP|HNPCC5|HSAP|p160
Chromosome:chr2
Strand:+
Coordinate:
Start Site(bp):47695530End Site(bp):47810101
Gene Summary:This gene encodes a member of the DNA mismatch repair MutS family. In E. coli, the MutS protein helps in the recognition of mismatched nucleotides prior to their repair. A highly conserved region of approximately 150 aa, called the Walker-A adenine nucleotide binding motif, exists in MutS homologs. The encoded protein heterodimerizes with MSH2 to form a mismatch recognition complex that functions as a bidirectional molecular switch that exchanges ADP and ATP as DNA mismatches are bound and dissociated. Mutations in this gene may be associated with hereditary nonpolyposis colon cancer, colorectal cancer, and endometrial cancer. Transcripts variants encoding different isoforms have been described. [provided by RefSeq, Jul 2013]
External Links:
Ensembl ID:ENSG00000116062
HGNC ID:HGNC:7329
Entrez Gene:2956



Expression Profile of MSH6 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-142-5p
YES
NO
YES
hsa-miR-224-5p
YES
YES
NO
hsa-miR-409-3p
YES
NO
YES
hsa-miR-505-3p
YES
YES
NO
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