ctcRbase

Entry Detail

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General Information

Database ID: SKCM03807 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SMPD1 Full Name: sphingomyelin phosphodiesterase 1 Category: mRNA Synonyms: ASM|ASMASE|NPD Chromosome: chr11 Strand: + Coordinate: Start Site(bp): 6390431 End Site(bp): 6394998 Gene Summary: The protein encoded by this gene is a lysosomal acid sphingomyelinase that converts sphingomyelin to ceramide. The encoded protein also has phospholipase C activity. Defects in this gene are a cause of Niemann-Pick disease type A (NPA) and Niemann-Pick disease type B (NPB). Multiple transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2010] External Links: Ensembl ID: ENSG00000166311 HGNC ID: HGNC:11120 Entrez Gene: 6609

Expression Profile of SMPD1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-103a-3p YES YES NO hsa-miR-107 YES YES NO hsa-miR-15a-5p YES YES YES hsa-miR-15b-5p YES YES YES hsa-miR-16-5p YES YES YES hsa-miR-195-5p YES YES YES hsa-miR-214-3p YES NO NO hsa-miR-346 YES YES NO hsa-miR-34a-5p YES YES NO hsa-miR-34c-5p YES YES NO hsa-miR-424-5p YES YES YES hsa-miR-449a YES YES NO hsa-miR-449b-5p YES YES NO hsa-miR-488-3p YES YES NO hsa-miR-497-5p YES YES YES Display: