ctcRbase

Entry Detail

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General Information

Database ID: SKCM03924 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: TTC19 Full Name: tetratricopeptide repeat domain 19 Category: mRNA Synonyms: 2010204O13Rik|MC3DN2 Chromosome: chr17 Strand: + Coordinate: Start Site(bp): 15999380 End Site(bp): 16045015 Gene Summary: This gene encodes a protein with a tetratricopeptide repeat (TPR) domain containing several TPRs of about 34 aa each. These repeats are found in a variety of organisms including bacteria, fungi and plants, and are involved in a variety of functions including protein-protein interactions. This protein is embedded in the inner mitochondrial membrane and is involved in the formation of the mitochondrial respiratory chain III. It has also been suggested that this protein plays a role in cytokinesis. Mutations in this gene cause mitochondrial complex III deficiency. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Sep 2012] External Links: Ensembl ID: ENSG00000011295 HGNC ID: HGNC:26006 Entrez Gene: 54902

Expression Profile of TTC19 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-139-5p YES YES NO hsa-miR-143-3p YES YES NO hsa-miR-197-3p YES YES NO hsa-miR-199a-5p YES YES NO hsa-miR-199b-5p YES YES NO hsa-miR-205-5p YES YES NO hsa-miR-214-3p YES YES NO hsa-miR-218-5p YES YES NO hsa-miR-223-3p YES YES NO hsa-miR-224-5p YES YES NO hsa-miR-29a-3p YES YES NO hsa-miR-29b-3p YES YES NO hsa-miR-29c-3p YES YES NO hsa-miR-34a-5p YES YES YES hsa-miR-34c-5p YES YES YES hsa-miR-410-3p YES YES NO hsa-miR-449a YES YES YES hsa-miR-449b-5p YES YES YES hsa-miR-488-3p YES YES NO hsa-miR-873-5p YES YES NO Display: