ctcRbase

Entry Detail

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General Information

Database ID: SKCM03942 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: CHSY1 Full Name: chondroitin sulfate synthase 1 Category: mRNA Synonyms: CHSY|CSS1|ChSy-1|TPBS Chromosome: chr15 Strand: - Coordinate: Start Site(bp): 101175723 End Site(bp): 101251932 Gene Summary: This gene encodes a member of the chondroitin N-acetylgalactosaminyltransferase family. These enzymes possess dual glucuronyltransferase and galactosaminyltransferase activity and play critical roles in the biosynthesis of chondroitin sulfate, a glycosaminoglycan involved in many biological processes including cell proliferation and morphogenesis. Decreased expression of this gene may play a role in colorectal cancer, and mutations in this gene are a cause of temtamy preaxial brachydactyly syndrome. [provided by RefSeq, Dec 2011] External Links: Ensembl ID: ENSG00000131873 HGNC ID: HGNC:17198 Entrez Gene: 22856

Expression Profile of CHSY1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES NO hsa-miR-124-3p YES YES YES hsa-miR-129-5p YES YES NO hsa-miR-1297 YES YES YES hsa-miR-132-3p YES YES NO hsa-miR-135a-5p YES YES YES hsa-miR-135b-5p YES YES YES hsa-miR-1-3p YES YES YES hsa-miR-141-3p YES YES NO hsa-miR-144-3p YES YES NO hsa-miR-183-5p YES YES NO hsa-miR-186-5p YES YES YES hsa-miR-200a-3p YES YES NO hsa-miR-200b-3p YES NO YES hsa-miR-200c-3p YES NO YES hsa-miR-206 YES YES YES hsa-miR-212-3p YES YES NO hsa-miR-217 YES NO YES hsa-miR-221-3p YES YES YES hsa-miR-222-3p YES YES YES hsa-miR-23a-3p YES YES NO hsa-miR-23b-3p YES YES NO hsa-miR-26a-5p YES YES YES hsa-miR-26b-5p YES NO YES hsa-miR-299-5p YES NO YES hsa-miR-29a-3p YES YES YES hsa-miR-29b-3p YES YES YES hsa-miR-29c-3p YES YES YES hsa-miR-300 YES YES NO hsa-miR-31-5p YES YES YES hsa-miR-362-5p YES NO YES hsa-miR-369-3p YES NO YES hsa-miR-375 YES YES YES hsa-miR-381-3p YES YES NO hsa-miR-409-3p YES NO YES hsa-miR-429 YES NO YES hsa-miR-487a-3p YES NO YES hsa-miR-488-3p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-506-3p YES YES NO hsa-miR-582-5p YES NO YES hsa-miR-613 YES YES YES hsa-miR-873-5p YES YES NO hsa-miR-9-5p YES NO YES Display: