Entry Detail



General Information

Database ID:SKCM03965
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:ATXN2
Full Name:ataxin 2
Category:mRNA
Synonyms:ATX2|SCA2|TNRC13
Chromosome:chr12
Strand:-
Coordinate:
Start Site(bp):111452214End Site(bp):111599676
Gene Summary:This gene belongs to a group of genes that is associated with microsatellite-expansion diseases, a class of neurological and neuromuscular disorders caused by expansion of short stretches of repetitive DNA. The protein encoded by this gene has two globular domains near the N-terminus, one of which contains a clathrin-mediated trans-Golgi signal and an endoplasmic reticulum exit signal. The encoded cytoplasmic protein localizes to the endoplasmic reticulum and plasma membrane, is involved in endocytosis, and modulates mTOR signals, modifying ribosomal translation and mitochondrial function. The N-terminal region of the protein contains a polyglutamine tract of 14-31 residues that can be expanded in the pathogenic state to 32-200 residues. Intermediate length expansions of this tract increase susceptibility to amyotrophic lateral sclerosis, while long expansions of this tract result in spinocerebellar ataxia-2, an autosomal-dominantly inherited, neurodegenerative disorder. Genome-wide association studies indicate that loss-of-function mutations in this gene may be associated with susceptibility to type I diabetes, obesity and hypertension. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2016]
External Links:
Ensembl ID:ENSG00000204842
HGNC ID:HGNC:10555
Entrez Gene:6311



Expression Profile of ATXN2 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-103a-3p
YES
YES
NO
hsa-miR-107
YES
YES
NO
hsa-miR-1297
YES
YES
NO
hsa-miR-145-5p
YES
YES
YES
hsa-miR-15a-5p
YES
YES
YES
hsa-miR-15b-5p
YES
YES
YES
hsa-miR-16-5p
YES
YES
YES
hsa-miR-195-5p
YES
YES
YES
hsa-miR-204-5p
YES
YES
NO
hsa-miR-211-5p
YES
YES
NO
hsa-miR-223-3p
YES
YES
NO
hsa-miR-26a-5p
YES
YES
NO
hsa-miR-26b-5p
YES
YES
NO
hsa-miR-296-3p
YES
YES
NO
hsa-miR-340-5p
YES
YES
NO
hsa-miR-382-5p
YES
YES
NO
hsa-miR-421
YES
YES
NO
hsa-miR-424-5p
YES
YES
YES
hsa-miR-431-5p
YES
YES
NO
hsa-miR-433-3p
YES
YES
NO
hsa-miR-497-5p
YES
YES
YES
hsa-miR-503-5p
YES
YES
NO
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