Entry Detail



General Information

Database ID:SKCM04071
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:CPSF4
Full Name:cleavage and polyadenylation specific factor 4
Category:mRNA
Synonyms:CPSF30|NAR|NEB-1|NEB1
Chromosome:chr7
Strand:+
Coordinate:
Start Site(bp):99438922End Site(bp):99457371
Gene Summary:Inhibition of the nuclear export of poly(A)-containing mRNAs caused by the influenza A virus NS1 protein requires its effector domain. The NS1 effector domain functionally interacts with the cellular 30 kDa subunit of cleavage and polyadenylation specific factor 4, an essential component of the 3' end processing machinery of cellular pre-mRNAs. In influenza virus-infected cells, the NS1 protein is physically associated with cleavage and polyadenylation specific factor 4, 30kD subunit. Binding of the NS1 protein to the 30 kDa protein in vitro prevents CPSF binding to the RNA substrate and inhibits 3' end cleavage and polyadenylation of host pre-mRNAs. Thus the NS1 protein selectively inhibits the nuclear export of cellular, and not viral, mRNAs. Multiple alternatively spliced transcript variants that encode different isoforms have been described for this gene. [provided by RefSeq, Jul 2008]
External Links:
Ensembl ID:ENSG00000160917
HGNC ID:HGNC:2327
Entrez Gene:10898



Expression Profile of CPSF4 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-let-7a-5p
YES
YES
YES
hsa-let-7b-5p
YES
YES
YES
hsa-let-7c-5p
YES
YES
YES
hsa-let-7d-5p
YES
YES
YES
hsa-let-7e-5p
YES
YES
YES
hsa-let-7f-5p
YES
YES
YES
hsa-let-7g-5p
YES
YES
YES
hsa-let-7i-5p
YES
YES
YES
hsa-miR-124-3p
YES
YES
NO
hsa-miR-1321
YES
NO
NO
hsa-miR-141-3p
YES
YES
NO
hsa-miR-145-5p
YES
YES
NO
hsa-miR-200a-3p
YES
YES
NO
hsa-miR-204-5p
YES
YES
NO
hsa-miR-211-5p
YES
YES
NO
hsa-miR-214-3p
YES
YES
NO
hsa-miR-23a-3p
YES
YES
YES
hsa-miR-23b-3p
YES
YES
YES
hsa-miR-24-3p
YES
YES
NO
hsa-miR-506-3p
YES
YES
NO
hsa-miR-542-3p
YES
YES
NO
hsa-miR-98-5p
YES
YES
YES
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