ctcRbase

Entry Detail

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General Information

Database ID: SKCM04079 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: VAPB Full Name: VAMP associated protein B and C Category: mRNA Synonyms: ALS8|VAMP-B|VAP-B Chromosome: chr20 Strand: + Coordinate: Start Site(bp): 58389122 End Site(bp): 58451101 Gene Summary: The protein encoded by this gene is a type IV membrane protein found in plasma and intracellular vesicle membranes. The encoded protein is found as a homodimer and as a heterodimer with VAPA. This protein also can interact with VAMP1 and VAMP2 and may be involved in vesicle trafficking. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000124164 HGNC ID: HGNC:12649 Entrez Gene: 9217

Expression Profile of VAPB Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-103a-3p YES YES NO hsa-miR-107 YES YES NO hsa-miR-133a-3p YES YES YES hsa-miR-133b YES YES YES hsa-miR-143-3p YES YES YES hsa-miR-147a YES NO NO hsa-miR-148a-3p YES YES NO hsa-miR-148b-3p YES YES NO hsa-miR-152-3p YES YES NO hsa-miR-15a-5p YES NO YES hsa-miR-15b-5p YES NO YES hsa-miR-16-5p YES NO YES hsa-miR-183-5p YES YES NO hsa-miR-185-5p YES NO NO hsa-miR-186-5p YES YES NO hsa-miR-190a-5p YES NO YES hsa-miR-190b YES NO YES hsa-miR-195-5p YES NO YES hsa-miR-204-5p YES YES NO hsa-miR-211-5p YES YES NO hsa-miR-221-3p YES YES YES hsa-miR-222-3p YES YES YES hsa-miR-27a-3p YES YES YES hsa-miR-27b-3p YES YES YES hsa-miR-29a-3p YES NO YES hsa-miR-29b-3p YES NO YES hsa-miR-29c-3p YES NO YES hsa-miR-31-5p YES YES YES hsa-miR-323a-3p YES NO YES hsa-miR-324-5p YES YES NO hsa-miR-329-3p YES NO NO hsa-miR-338-3p YES YES NO hsa-miR-362-3p YES NO NO hsa-miR-374a-5p YES YES NO hsa-miR-374b-5p YES YES NO hsa-miR-376c-3p YES NO YES hsa-miR-424-5p YES NO YES hsa-miR-487a-3p YES NO YES hsa-miR-495-3p YES YES NO hsa-miR-497-5p YES NO YES hsa-miR-542-3p YES YES YES hsa-miR-758-3p YES YES YES Display: