ctcRbase

Entry Detail

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General Information

Database ID: SKCM04142 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: HTATSF1 Full Name: HIV-1 Tat specific factor 1 Category: mRNA Synonyms: TAT-SF1|TATSF1|dJ196E23.2 Chromosome: chrX Strand: + Coordinate: Start Site(bp): 136497079 End Site(bp): 136512346 Gene Summary: The protein encoded by this gene functions as a cofactor for the stimulation of transcriptional elongation by HIV-1 Tat, which binds to the HIV-1 promoter through Tat-TAR interaction. This protein may also serve as a dual-function factor to couple transcription and splicing and to facilitate their reciprocal activation. Alternatively spliced transcript variants have been found for this gene.[provided by RefSeq, Sep 2009] External Links: Ensembl ID: ENSG00000102241 HGNC ID: HGNC:5276 Entrez Gene: 27336

Expression Profile of HTATSF1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-145-5p YES YES YES hsa-miR-194-5p YES YES NO hsa-miR-200b-3p YES YES NO hsa-miR-200c-3p YES YES NO hsa-miR-324-5p YES YES NO hsa-miR-33a-5p YES YES NO hsa-miR-33b-5p YES YES NO hsa-miR-425-5p YES YES NO hsa-miR-429 YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-495-3p YES YES NO Display: