ctcRbase

Entry Detail

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General Information

Database ID: SKCM04225 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: NIPA1 Full Name: NIPA magnesium transporter 1 Category: mRNA Synonyms: FSP3|SLC57A1|SPG6 Chromosome: chr15 Strand: + Coordinate: Start Site(bp): 22773063 End Site(bp): 22829791 Gene Summary: This gene encodes a magnesium transporter that associates with early endosomes and the cell surface in a variety of neuronal and epithelial cells. This protein may play a role in nervous system development and maintenance. Multiple transcript variants encoding different isoforms have been found for this gene. Mutations in this gene have been associated with autosomal dominant spastic paraplegia 6. [provided by RefSeq, Nov 2008] External Links: Ensembl ID: ENSG00000170113 HGNC ID: HGNC:17043 Entrez Gene: 123606

Expression Profile of NIPA1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES YES hsa-let-7b-5p YES YES YES hsa-let-7c-5p YES YES YES hsa-let-7d-5p YES YES YES hsa-let-7e-5p YES YES YES hsa-let-7f-5p YES YES YES hsa-let-7g-5p YES YES YES hsa-let-7i-5p YES YES YES hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-124-3p YES YES YES hsa-miR-125a-5p YES NO YES hsa-miR-125b-5p YES NO YES hsa-miR-1271-5p YES YES YES hsa-miR-1297 YES YES NO hsa-miR-130a-3p YES YES YES hsa-miR-130b-3p YES YES YES hsa-miR-133a-3p YES NO YES hsa-miR-133b YES NO YES hsa-miR-134-5p YES NO YES hsa-miR-140-5p YES NO YES hsa-miR-17-5p YES YES NO hsa-miR-182-5p YES NO YES hsa-miR-186-5p YES YES NO hsa-miR-19a-3p YES YES NO hsa-miR-19b-3p YES YES NO hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-23b-3p YES YES NO hsa-miR-26a-5p YES YES NO hsa-miR-26b-5p YES YES NO hsa-miR-301a-3p YES YES YES hsa-miR-301b-3p YES YES YES hsa-miR-340-5p YES NO YES hsa-miR-377-3p YES YES NO hsa-miR-421 YES YES NO hsa-miR-433-3p YES YES NO hsa-miR-454-3p YES YES YES hsa-miR-506-3p YES YES NO hsa-miR-519d-3p YES YES NO hsa-miR-875-5p YES YES NO hsa-miR-93-5p YES YES NO hsa-miR-96-5p YES YES YES hsa-miR-98-5p YES YES YES Display: