ctcRbase

Entry Detail

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General Information

Database ID: SKCM04236 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: CHST11 Full Name: carbohydrate sulfotransferase 11 Category: mRNA Synonyms: C4ST|C4ST-1|C4ST1|HSA269537|OCBMD Chromosome: chr12 Strand: + Coordinate: Start Site(bp): 104455295 End Site(bp): 104762014 Gene Summary: The protein encoded by this gene belongs to the sulfotransferase 2 family. It is localized to the golgi membrane, and catalyzes the transfer of sulfate to position 4 of the N-acetylgalactosamine (GalNAc) residue of chondroitin. Chondroitin sulfate constitutes the predominant proteoglycan present in cartilage, and is distributed on the surfaces of many cells and extracellular matrices. A chromosomal translocation involving this gene and IgH, t(12;14)(q23;q32), has been reported in a patient with B-cell chronic lymphocytic leukemia. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2011] External Links: Ensembl ID: ENSG00000171310 HGNC ID: HGNC:17422 Entrez Gene: 50515

Expression Profile of CHST11 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-103a-3p YES YES YES hsa-miR-107 YES YES YES hsa-miR-1-3p YES YES NO hsa-miR-206 YES YES NO hsa-miR-340-5p YES YES NO hsa-miR-551a YES YES NO hsa-miR-551b-3p YES YES NO hsa-miR-613 YES YES NO Display: