ctcRbase

Entry Detail

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General Information

Database ID: SKCM04248 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SMARCA5 Full Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 Category: mRNA Synonyms: ISWI|SNF2H|WCRF135|hISWI|hSNF2H Chromosome: chr4 Strand: + Coordinate: Start Site(bp): 143513463 End Site(bp): 143557486 Gene Summary: The protein encoded by this gene is a member of the SWI/SNF family of proteins. Members of this family have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The protein encoded by this gene is a component of the chromatin remodeling and spacing factor RSF, a facilitator of the transcription of class II genes by RNA polymerase II. The encoded protein is similar in sequence to the Drosophila ISWI chromatin remodeling protein. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000153147 HGNC ID: HGNC:11101 Entrez Gene: 8467

Expression Profile of SMARCA5 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-100-5p YES YES YES hsa-miR-101-3p YES YES YES hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-1297 YES YES YES hsa-miR-144-3p YES YES YES hsa-miR-17-5p YES YES NO hsa-miR-186-5p YES YES YES hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-26a-5p YES YES YES hsa-miR-26b-5p YES YES YES hsa-miR-299-5p YES NO YES hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-33a-5p YES YES YES hsa-miR-33b-5p YES NO YES hsa-miR-425-5p YES YES NO hsa-miR-490-3p YES YES NO hsa-miR-519d-3p YES YES NO hsa-miR-93-5p YES YES NO hsa-miR-99a-5p YES YES YES hsa-miR-99b-5p YES YES YES Display: