ctcRbase

Entry Detail

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General Information

Database ID: SKCM04285 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SORT1 Full Name: sortilin 1 Category: mRNA Synonyms: Gp95|LDLCQ6|NT3|NTR3 Chromosome: chr1 Strand: - Coordinate: Start Site(bp): 109309568 End Site(bp): 109397951 Gene Summary: This gene encodes a member of the VPS10-related sortilin family of proteins. The encoded preproprotein is proteolytically processed by furin to generate the mature receptor. This receptor plays a role in the trafficking of different proteins to either the cell surface, or subcellular compartments such as lysosomes and endosomes. Expression levels of this gene may influence the risk of myocardial infarction in human patients. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2015] External Links: Ensembl ID: ENSG00000134243 HGNC ID: HGNC:11186 Entrez Gene: 6272

Expression Profile of SORT1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-122-5p YES YES YES hsa-miR-125a-5p YES NO YES hsa-miR-125b-5p YES NO YES hsa-miR-1271-5p YES YES YES hsa-miR-138-5p YES YES NO hsa-miR-142-5p YES NO YES hsa-miR-146a-5p YES YES YES hsa-miR-146b-5p YES YES YES hsa-miR-149-5p YES NO YES hsa-miR-15a-5p YES NO YES hsa-miR-15b-5p YES NO YES hsa-miR-16-5p YES NO YES hsa-miR-17-5p YES YES NO hsa-miR-181a-5p YES YES NO hsa-miR-181b-5p YES YES NO hsa-miR-181c-5p YES YES NO hsa-miR-181d-5p YES YES NO hsa-miR-182-5p YES NO YES hsa-miR-186-5p YES YES YES hsa-miR-18a-5p YES YES NO hsa-miR-18b-5p YES YES NO hsa-miR-194-5p YES YES NO hsa-miR-195-5p YES NO YES hsa-miR-204-5p YES YES NO hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-211-5p YES YES NO hsa-miR-216a-5p YES YES NO hsa-miR-216b-5p YES YES NO hsa-miR-221-3p YES YES NO hsa-miR-222-3p YES YES NO hsa-miR-329-3p YES NO NO hsa-miR-330-3p YES NO YES hsa-miR-339-5p YES YES NO hsa-miR-340-5p YES YES YES hsa-miR-362-3p YES NO NO hsa-miR-382-5p YES YES NO hsa-miR-410-3p YES NO YES hsa-miR-424-5p YES NO YES hsa-miR-497-5p YES NO YES hsa-miR-519d-3p YES YES NO hsa-miR-582-5p YES NO YES hsa-miR-7-5p YES YES YES hsa-miR-93-5p YES YES NO hsa-miR-9-5p YES YES YES hsa-miR-96-5p YES YES YES Display: