ctcRbase

Entry Detail

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General Information

Database ID: SKCM04393 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SMARCD1 Full Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 Category: mRNA Synonyms: BAF60A|CRACD1|Rsc6p Chromosome: chr12 Strand: + Coordinate: Start Site(bp): 50084972 End Site(bp): 50100712 Gene Summary: The protein encoded by this gene is a member of the SWI/SNF family of proteins, whose members display helicase and ATPase activities and which are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and has sequence similarity to the yeast Swp73 protein. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000066117 HGNC ID: HGNC:11106 Entrez Gene: 6602

Expression Profile of SMARCD1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-100-5p YES NO YES hsa-miR-101-3p YES YES YES hsa-miR-122-5p YES NO YES hsa-miR-1252-5p YES NO NO hsa-miR-133a-3p YES YES YES hsa-miR-133b YES YES YES hsa-miR-136-5p YES YES NO hsa-miR-148a-3p YES NO YES hsa-miR-148b-3p YES NO YES hsa-miR-150-5p YES NO YES hsa-miR-152-3p YES NO YES hsa-miR-191-5p YES YES YES hsa-miR-193a-5p YES NO YES hsa-miR-199a-5p YES YES YES hsa-miR-199b-5p YES YES YES hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-205-5p YES NO YES hsa-miR-214-3p YES YES NO hsa-miR-21-5p YES YES YES hsa-miR-223-3p YES YES YES hsa-miR-224-5p YES NO YES hsa-miR-24-3p YES NO YES hsa-miR-27a-3p YES YES NO hsa-miR-27b-3p YES YES NO hsa-miR-31-5p YES YES YES hsa-miR-331-3p YES NO YES hsa-miR-365a-3p YES NO YES hsa-miR-370-3p YES YES YES hsa-miR-421 YES YES YES hsa-miR-423-5p YES NO YES hsa-miR-429 YES YES YES hsa-miR-483-3p YES NO YES hsa-miR-490-3p YES YES YES hsa-miR-491-5p YES YES YES hsa-miR-532-3p YES NO YES hsa-miR-590-5p YES YES YES hsa-miR-7-5p YES NO YES hsa-miR-99a-5p YES NO YES hsa-miR-99b-5p YES NO YES Display: