ctcRbase

Entry Detail

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General Information

Database ID: SKCM04435 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SMARCC1 Full Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 Category: mRNA Synonyms: BAF155|CRACC1|Rsc8|SRG3|SWI3 Chromosome: chr3 Strand: - Coordinate: Start Site(bp): 47585272 End Site(bp): 47782106 Gene Summary: The protein encoded by this gene is a member of the SWI/SNF family of proteins, whose members display helicase and ATPase activities and which are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and contains a predicted leucine zipper motif typical of many transcription factors. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000173473 HGNC ID: HGNC:11104 Entrez Gene: 6599

Expression Profile of SMARCC1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES YES hsa-let-7b-5p YES YES YES hsa-let-7c-5p YES YES YES hsa-let-7d-5p YES YES YES hsa-let-7e-5p YES YES YES hsa-let-7f-5p YES YES YES hsa-let-7g-5p YES YES YES hsa-let-7i-5p YES YES YES hsa-miR-124-3p YES YES YES hsa-miR-129-5p YES YES YES hsa-miR-132-3p YES YES NO hsa-miR-136-5p YES YES NO hsa-miR-1-3p YES NO YES hsa-miR-140-3p YES NO YES hsa-miR-144-3p YES YES NO hsa-miR-147a YES NO NO hsa-miR-150-5p YES YES NO hsa-miR-153-3p YES YES YES hsa-miR-154-5p YES YES NO hsa-miR-196a-5p YES YES YES hsa-miR-196b-5p YES YES YES hsa-miR-206 YES NO YES hsa-miR-212-3p YES YES NO hsa-miR-214-3p YES YES NO hsa-miR-216a-5p YES YES NO hsa-miR-224-5p YES YES NO hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-28-5p YES YES NO hsa-miR-29a-3p YES YES YES hsa-miR-29b-3p YES YES YES hsa-miR-29c-3p YES YES YES hsa-miR-320a YES NO YES hsa-miR-320b YES NO YES hsa-miR-320c YES NO YES hsa-miR-320d YES NO YES hsa-miR-335-5p YES YES NO hsa-miR-33a-5p YES YES NO hsa-miR-33b-5p YES YES NO hsa-miR-365a-3p YES NO YES hsa-miR-371a-5p YES YES NO hsa-miR-410-3p YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-506-3p YES YES NO hsa-miR-532-5p YES NO YES hsa-miR-613 YES NO YES hsa-miR-708-5p YES YES NO hsa-miR-98-5p YES YES YES Display: